CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0511500-01	Rice	cytosol, extracellular	16.72	47.52
Zm00001d012839_P002	Maize	cytosol	28.92	35.47
KRH63866	Soybean	nucleus	64.81	34.9
KRH54087	Soybean	nucleus	64.46	34.71
VIT_17s0000g00230.t01	Wine grape	nucleus	59.93	32.7
Os03t0851600-02	Rice	nucleus, plastid	41.81	31.58
Solyc03g118220.1.1	Tomato	nucleus	48.43	30.02
CDY45797	Canola	nucleus	54.36	29.89
AT5G50970.1	Thale cress	nucleus	53.31	29.88
CDX84892	Canola	nucleus	52.96	29.75
GSMUA_Achr8P00320_001	Banana	cytosol	50.52	28.1
Bra022749.1-P	Field mustard	nucleus	52.96	27.89
Solyc12g042200.1.1	Tomato	nucleus	55.75	27.54
PGSC0003DMT400036938	Potato	nucleus	51.57	26.15
TraesCS5D01G545100.1	Wheat	nucleus	47.04	24.95
TraesCS4A01G328700.2	Wheat	nucleus	46.69	24.86
KXG37112	Sorghum	nucleus	46.34	24.09
Zm00001d034862_P003	Maize	nucleus	46.34	23.96
TraesCS5B01G542700.2	Wheat	nucleus	47.04	23.28
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	45.3	22.65
Zm00001d012840_P001	Maize	nucleus	9.06	9.7
Zm00001d013894_P001	Maize	nucleus	2.79	4.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A0R0IEY4	EMBL:ACUP02004749	EnsemblPlantsGene:GLYMA_08G007600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0032008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH41054	ProteinID:KRH41054
ProteinID:KRH41054.1	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0006EE05A2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:578178..581744

Molecular Weight (calculated)

32531.0 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.684

Length

287 amino acids

Sequence
(BLAST)

001: MSKHPYKTAF KTEHDQNAVV NTTSREEHEE ALVALVEHRT REVKNENMMD HKSDLSSKNH HQSKSHVTVN SKTSHYITAN ALDGVVNLWE VHSSGSGASL
101: LRTTDCASQK QRRWPEDVAW HPDVNSVFSV YNADSQDSQI SVTDFSKVKG GERERVNFLE DKPHVKGVIN SIVFLPWENT SFVTGGTDHA VIMWNENSEN
201: KWKPQLLHNY DHSSAVMGVA GMQQKQIVLS AGKDKKILGY DVHAGKQEFK HQVDSKCLSV LPNPCDFNLF MVQTGTHERQ LRLFDIR

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.