Factsheet for TraesCS5D01G545100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G542700.2	Wheat	nucleus	97.6	91.03
TraesCS4A01G328700.2	Wheat	nucleus	89.83	90.17
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	84.66	79.79
Zm00001d012839_P002	Maize	cytosol	34.2	79.06
Os03t0851600-02	Rice	nucleus, plastid	53.97	76.84
Os08t0511500-01	Rice	cytosol, extracellular	12.94	69.31
KXG37112	Sorghum	nucleus	65.43	64.13
Zm00001d034862_P003	Maize	nucleus	63.22	61.62
Solyc03g118210.2.1	Tomato	cytosol	12.57	56.2
GSMUA_Achr8P00320_001	Banana	cytosol	51.76	54.26
KRH54087	Soybean	nucleus	48.98	49.72
VIT_17s0000g00230.t01	Wine grape	nucleus	47.87	49.24
KRH63866	Soybean	nucleus	48.43	49.16
AT5G50970.1	Thale cress	nucleus	46.4	49.02
CDX84892	Canola	nucleus	45.29	47.95
Zm00001d012840_P001	Maize	nucleus	23.66	47.76
CDY45797	Canola	nucleus	45.66	47.32
KRH41054	Soybean	nucleus	24.95	47.04
Bra022749.1-P	Field mustard	nucleus	46.21	45.87
PGSC0003DMT400036938	Potato	nucleus	43.25	41.34

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PRINTS:PR01217	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G545100	EnsemblPlants:TraesCS5D01G545100.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:554467487..554472596

Molecular Weight (calculated)

59862.0 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.681

Length

541 amino acids

Sequence
(BLAST)

001: MAGDAPPMKR PKLEKDDGWS RHPSAANGSA PRPPAASPSD APPPGGEEDD EELPEEAVLA LIAHHEREVE RYKLKLDAAE RKLADTRSRL ARHRGRAPDR
101: NNQPPPPPPP VQKAAAPDRR TPPPSQREAP KPSAPSQKPP APQARPQLVI PGAGHSRPAP RPALPVPKKS PSSSSPSLVQ APQRKAEKKP KREIVQREHQ
201: NLVQSVKKSS APTTLKFYGG TLVSSQHKRK LRCLELCPAD DQLVITSALD GMVTLWQVQS SGPSISLLST TNCFSSKQRW PEDVAWHPDG DTIFAVYTAD
301: GGDTQVSMMN LNTSGQKKVT FLQAKPHTKG IINNINFMPW SDTCFMTGGS DHAVMLWQER DDSWNHKKVH RDLHSSAVMG VAGLQQRKTI ISVGMDKRII
401: SYDVSAERAE YKNLIDSKCL SVLLNPSDFN LYMVQTGSPG RQLRLFDIRL RQTEVHAIGW KQTSSESQSA LINQSWSPDG WYLSSGSADP VIHIFDIRYQ
501: GQKPCQSVQA HQKRVFKAVW HQTFPVLTSI SSDLNVAIHK Y

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.