Factsheet for Bra022749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84892	Canola	nucleus	89.36	95.3
AT5G50970.1	Thale cress	nucleus	73.94	78.71
Zm00001d012839_P002	Maize	cytosol	28.26	65.81
VIT_17s0000g00230.t01	Wine grape	nucleus	58.35	60.46
Os03t0851600-02	Rice	nucleus, plastid	41.47	59.47
KRH54087	Soybean	nucleus	56.15	57.41
KRH63866	Soybean	nucleus	55.96	57.22
GSMUA_Achr8P00320_001	Banana	cytosol	51.93	54.84
Os08t0511500-01	Rice	cytosol, extracellular	9.91	53.47
KRH41054	Soybean	nucleus	27.89	52.96
Solyc12g042200.1.1	Tomato	nucleus	52.29	49.05
TraesCS4A01G328700.2	Wheat	nucleus	45.87	46.38
TraesCS5D01G545100.1	Wheat	nucleus	45.87	46.21
PGSC0003DMT400036938	Potato	nucleus	47.52	45.76
KXG37112	Sorghum	nucleus	45.14	44.57
TraesCS5B01G542700.2	Wheat	nucleus	46.61	43.79
Zm00001d034862_P003	Maize	nucleus	44.59	43.78
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	46.05	43.73
Bra002274.1-P	Field mustard	nucleus	42.02	40.03
Solyc03g118220.1.1	Tomato	nucleus	33.58	39.52
Bra020075.1-P	Field mustard	nucleus	39.08	36.54
Zm00001d012840_P001	Maize	nucleus	12.84	26.12
Zm00001d013894_P001	Maize	nucleus	6.97	19.29
Bra002273.1-P	Field mustard	nucleus	6.24	17.17

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlantsGene:Bra022749	EnsemblPlants:Bra022749.1	EnsemblPlants:Bra022749.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0032008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4E1U9
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000254016A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	SEG:seg	:	:	:	:

Description

AT5G50970 (E=2e-206) | WD-40 repeat family protein

Coordinates

chrA03:-:6807281..6809927

Molecular Weight (calculated)

61523.5 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.765

Length

545 amino acids

Sequence
(BLAST)

001: MSELRKPISK RQEEEEDNNV GSREEQEQAL VALVEHRSAE TERLKHHISN YQAKLIEAER SLRDSKAKLA NLRGHDDGVS VPSVSSAKKE NPLKTLRNVN
101: DDESTKNFTP SRKDYPSPSP SKILKPSVPT SNSSSISKSK TNTPVAVKQK PETSSRDSIS NSKSKTVVVK QTSSRDSPNL KASRDRDRGT KRKFEQKEHK
201: EVIRFIARNS SPTTIKCNSS NQISSQHKRK LRSLILCPVN EQLFATSSLD GMVSLWQLQP GRLAASLLST TDCLSQKQRR WGEDMAWHPS GHTLFSVYTA
301: DDGDSQISIL NLNKTRGVTF LENKPHVKGI INNIKFMPWE NTCFATGGSD HAVVLWNESD DDEENKWKSK TLHRNLHSAA VMGVDGMRNK NVVLSVGADK
401: RIYGFDVQVG RADYKHQIEY KCMSVLSNPC DFNLFMVQSG EPEKQLRLFD IRLRRTELHS FGWKQDSSES QSALINQSWS PDGLYITSGS ADPVIHVFDI
501: RYNARKPTQS IKAHQKRVFK AEWHYSQPLL ISISSDLNIG LHKIS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.