Factsheet for GSMUA_Achr8P00320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012839_P002	Maize	cytosol	33.91	74.79
Os03t0851600-02	Rice	nucleus, plastid	50.19	68.16
Os08t0511500-01	Rice	cytosol, extracellular	12.02	61.39
Solyc03g118210.2.1	Tomato	cytosol	14.15	60.33
VIT_17s0000g00230.t01	Wine grape	nucleus	60.47	59.32
KRH63866	Soybean	nucleus	60.08	58.16
KRH54087	Soybean	nucleus	59.88	57.97
CDX84892	Canola	nucleus	53.68	54.21
KXG37112	Sorghum	nucleus	57.56	53.8
AT5G50970.1	Thale cress	nucleus	53.29	53.71
CDY45797	Canola	nucleus	53.68	53.07
Zm00001d034862_P003	Maize	nucleus	56.59	52.61
TraesCS4A01G328700.2	Wheat	nucleus	54.84	52.5
Bra022749.1-P	Field mustard	nucleus	54.84	51.93
TraesCS5D01G545100.1	Wheat	nucleus	54.26	51.76
KRH41054	Soybean	nucleus	28.1	50.52
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	54.26	48.78
TraesCS5B01G542700.2	Wheat	nucleus	54.65	48.62
PGSC0003DMT400036938	Potato	nucleus	52.52	47.88
Zm00001d012840_P001	Maize	nucleus	17.05	32.84
Zm00001d013894_P001	Maize	nucleus	10.47	27.41

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008	EnsemblPlantsGene:GSMUA_Achr8G00320_001
EnsemblPlants:GSMUA_Achr8P00320_001	EnsemblPlants:GSMUA_Achr8T00320_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TLD4
PFAM:PF00400	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000296EEF6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G00320_001]

Coordinates

chr8:+:259133..277779

Molecular Weight (calculated)

57299.6 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.496

Length

516 amino acids

Sequence
(BLAST)

001: MQEQEEALVA LIEHRTKECQ LLKQKLAHYK SQLEEAEKRL SESQAKLDRI RLRSKAAPVA TDVVKTEARP SNPIRNNNDH AQTRPTPSQQ LSRPQLLIPP
101: HNTRLPSLAA DARAGRNAKP ELKASAAAGG PMDSSPSTQP AGTGTSKPFI EKGGPVGSKE KRIKRKLEQK EHQDLIHNIR SSSSPCIIRF QSGTLISSQH
201: KRKLRSLELC PVNDHLFVTS ALDGVVNLWQ VQAKGSNASL LSSMDCLSPK QRRWPEDIAW HPDGDRIFAA YTADGGDSQI SVLNLNASRE KKVTFLEGKP
301: HQKGIINSIM FMPWIDLCFV TGGSDHAVIL WQEIDDSCKP KTIHGNLHSS AVMGVAGLQQ KKTVLSVGAD KRIIAFDMLS GRSEFKNQIE SKCMSVLPNP
401: CDFNLFMVQA GEPGRQLRLF DVRLRQTEIH AFGWKQETSE SQSALINQAW SPDGLYITSG SADPMIHIFD IRYDGRKPSQ SVQAHQKRVF KAVWHQSLPL
501: LTSISSDLNI GLHRAL

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.