CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54087	Soybean	nucleus	96.44	96.44
Zm00001d012839_P002	Maize	cytosol	29.46	67.09
VIT_17s0000g00230.t01	Wine grape	nucleus	65.67	66.54
KRH41054	Soybean	nucleus	34.9	64.81
AT5G50970.1	Thale cress	nucleus	58.16	60.55
Os03t0851600-02	Rice	nucleus, plastid	42.96	60.26
GSMUA_Achr8P00320_001	Banana	cytosol	58.16	60.08
CDX84892	Canola	nucleus	56.66	59.1
CDY45797	Canola	nucleus	56.29	57.47
Solyc12g042200.1.1	Tomato	nucleus	61.35	56.28
Bra022749.1-P	Field mustard	nucleus	57.22	55.96
Os08t0511500-01	Rice	cytosol, extracellular	10.51	55.45
PGSC0003DMT400036938	Potato	nucleus	55.53	52.3
TraesCS5D01G545100.1	Wheat	nucleus	49.16	48.43
TraesCS4A01G328700.2	Wheat	nucleus	48.41	47.87
Solyc03g118220.1.1	Tomato	nucleus	41.46	47.73
KXG37112	Sorghum	nucleus	49.34	47.64
Zm00001d034862_P003	Maize	nucleus	48.97	47.03
TraesCS5B01G542700.2	Wheat	nucleus	49.16	45.17
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	47.65	44.25
Zm00001d012840_P001	Maize	nucleus	15.2	30.22
Zm00001d013894_P001	Maize	nucleus	9.57	25.89

Protein Annotations

EntrezGene:102662882	Gene3D:2.130.10.10	MapMan:35.2	EMBL:ACUP02002721	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G201300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0032008	UniProt:I1JXQ9	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH63866	ProteinID:KRH63866	ProteinID:KRH63866.1	PFAM:PF00400	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002964EC3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:WDR24	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:47421431..47428265

Molecular Weight (calculated)

59529.2 Da

IEP (calculated)

9.977

GRAVY (calculated)

-0.667

Length

533 amino acids

Sequence
(BLAST)

001: MEPNEENGGS TSREEQEEAL VALIEHRTHE VKNLRHRIAY YKTQLDEAEK RLQDSESKLA RLRGQTVSSR STLDDGIETL KTKSRSSSPI DRNEVSTKSQ
101: HQSKPELLIP SLNPKISQPV LLPKSSSKAS ITSSSEATPG VHNSPITGGS SRGKSDKSQS NRLSSEQQKT EVKEKGTKRK FEQKGHKELI PLVRKSSSPS
201: LVTCQTSNHI SSQHKRKLRS IALCPVNDQL FVTSALDGVV NFWQVQAKGA GASRLSTTDC ASQKQRRWPE DLAWHPEGNS LFSVYSADGG DSQVSITNLN
301: KGQGGERVKF LEDKPHVKGI INGIVFMPWE NTCFVTGGSD HAVILWNEQD DEKWKPKALH RNLHSSAVMG VAGMQQKQMV LSVGADRRIF GYDVRVGRAD
401: FKHQVDSKCM SVLPNPSDFN LFMVQTGTHE RQLRLFDIRL RNTELHAFGW KQESSDSQSA LINQAWSPDG HYITSGSADP VIHIFDIRYT AHKPSQSIRA
501: HQKRVFRAMW LQSIPLVISI SSDLNIGLHK VYS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.