Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G545100.1 | Wheat | nucleus | 91.03 | 97.6 |
| TraesCS4A01G328700.2 | Wheat | nucleus | 84.66 | 91.09 |
| HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 79.31 | 80.14 |
| Zm00001d012839_P002 | Maize | cytosol | 32.07 | 79.49 |
| Os03t0851600-02 | Rice | nucleus, plastid | 50.34 | 76.84 |
| Os08t0511500-01 | Rice | cytosol, extracellular | 12.07 | 69.31 |
| KXG37112 | Sorghum | nucleus | 61.55 | 64.67 |
| Zm00001d034862_P003 | Maize | nucleus | 59.31 | 61.98 |
| Solyc03g118210.2.1 | Tomato | cytosol | 11.72 | 56.2 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 48.62 | 54.65 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 45.69 | 50.38 |
| KRH54087 | Soybean | nucleus | 45.69 | 49.72 |
| AT5G50970.1 | Thale cress | nucleus | 43.62 | 49.41 |
| KRH63866 | Soybean | nucleus | 45.17 | 49.16 |
| CDX84892 | Canola | nucleus | 42.59 | 48.34 |
| Zm00001d012840_P001 | Maize | nucleus | 22.07 | 47.76 |
| CDY45797 | Canola | nucleus | 42.93 | 47.7 |
| KRH41054 | Soybean | nucleus | 23.28 | 47.04 |
| Bra022749.1-P | Field mustard | nucleus | 43.79 | 46.61 |
| PGSC0003DMT400036938 | Potato | nucleus | 40.69 | 41.7 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5B01G542700 | EnsemblPlants:TraesCS5B01G542700.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:-:696193870..696199087
Molecular Weight (calculated)
64110.2 Da
IEP (calculated)
10.300
GRAVY (calculated)
-0.668
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDAPPMKR PKLEKDDGWS RHPSAANGSA PRPPAASPSQ APPPDGEEDD GELPEEAVLA LIAHHEREVE RYKLKVHLTS PLPSPLWFLV MKDRSSRPQL
101: EAAERKLADT RSRLARHRGR APDRSHPPPP PPPPVQKAAA PDRRTPPPPV QKAAAPDRRT PPPSQREAPK PAAQSQKPPA PQARPQLVIP GAGHSRPAPR
201: PALPVPKKSP SSSSPSLAQA PQRKADKKPK REIVQREHQN LVQSVKKSSA PTTLKFYGGT LVSSQHKRKL RCLELCPADD QLVITSALDG MVTLWQVQSS
301: GPSISLLSTT NCFSSKQRWP EDVAWHPDGD TIFAVYTADG GDTQVSMMNL NTSGQKKVTF LQAKPHTKGI INNINFMPWS DTCFMTGGSD HAVVLWQEKD
401: DSWNHKKVHR DLHSSAVMGV AGLQQRKTII SVGMDKRIIS YDVSAERAEY KNLIDSKCLS VLLNPSDFNL YMVQTGSPGR QLRLFDIRLR QTEVHAIGWK
501: QTSSESQSAL INQSWSPDGW YLSSGSADPV IHIFDIRYQG QKPCQSVQAH QKRVFKAVWH QTFPVLTSIS SDLNVAIHKY
101: EAAERKLADT RSRLARHRGR APDRSHPPPP PPPPVQKAAA PDRRTPPPPV QKAAAPDRRT PPPSQREAPK PAAQSQKPPA PQARPQLVIP GAGHSRPAPR
201: PALPVPKKSP SSSSPSLAQA PQRKADKKPK REIVQREHQN LVQSVKKSSA PTTLKFYGGT LVSSQHKRKL RCLELCPADD QLVITSALDG MVTLWQVQSS
301: GPSISLLSTT NCFSSKQRWP EDVAWHPDGD TIFAVYTADG GDTQVSMMNL NTSGQKKVTF LQAKPHTKGI INNINFMPWS DTCFMTGGSD HAVVLWQEKD
401: DSWNHKKVHR DLHSSAVMGV AGLQQRKTII SVGMDKRIIS YDVSAERAEY KNLIDSKCLS VLLNPSDFNL YMVQTGSPGR QLRLFDIRLR QTEVHAIGWK
501: QTSSESQSAL INQSWSPDGW YLSSGSADPV IHIFDIRYQG QKPCQSVQAH QKRVFKAVWH QTFPVLTSIS SDLNVAIHKY
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.