CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022749.1-P	Field mustard	nucleus	95.3	89.36
CDY45797	Canola	nucleus	82.78	81.03
AT5G50970.1	Thale cress	nucleus	79.26	79.1
Zm00001d012839_P002	Maize	cytosol	30.14	65.81
VIT_17s0000g00230.t01	Wine grape	nucleus	61.45	59.7
Os03t0851600-02	Rice	nucleus, plastid	43.44	58.42
KRH54087	Soybean	nucleus	59.3	56.85
KRH63866	Soybean	nucleus	59.1	56.66
GSMUA_Achr8P00320_001	Banana	cytosol	54.21	53.68
Os08t0511500-01	Rice	cytosol, extracellular	10.57	53.47
KRH41054	Soybean	nucleus	29.75	52.96
Solyc12g042200.1.1	Tomato	nucleus	56.16	49.4
PGSC0003DMT400036938	Potato	nucleus	50.29	45.41
TraesCS5D01G545100.1	Wheat	nucleus	47.95	45.29
TraesCS4A01G328700.2	Wheat	nucleus	47.36	44.9
KXG37112	Sorghum	nucleus	47.55	44.02
Zm00001d034862_P003	Maize	nucleus	46.77	43.06
TraesCS5B01G542700.2	Wheat	nucleus	48.34	42.59
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	47.36	42.16
Solyc03g118220.1.1	Tomato	nucleus	35.62	39.31
CDX92489	Canola	cytosol	43.44	36.27
CDY44954	Canola	nucleus	41.29	35.95
CDY42317	Canola	nucleus	40.9	35.73
CDY35839	Canola	nucleus	43.25	27.08
Zm00001d012840_P001	Maize	nucleus	12.92	24.63
Zm00001d013894_P001	Maize	nucleus	6.85	17.77
CDX92490	Canola	nucleus	6.65	17.17

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlants:CDX84892	ProteinID:CDX84892	ProteinID:CDX84892.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00142216001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EE96CB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	SEG:seg	:	:	:	:

Description

BnaA03g13380D

Coordinates

chrLK031838:+:1798602..1801444

Molecular Weight (calculated)

57907.2 Da

IEP (calculated)

9.848

GRAVY (calculated)

-0.750

Length

511 amino acids

Sequence
(BLAST)

001: MSELRKPISK RQEEEEDNNV GSREEQEQAL VALVEHRSAE TERLKHHISN YQAKLIEAER SLRDSKAKLA NLRGHDDGTL RNVNDDESTR NVTPSRKDYP
101: SPSPSKILKP SVPTSNSSSI SKSKTNTPVS KTVVVKQTSS RDSPNLKASR DRDRGTKRKF EQKEHKEVIR FIARNSSPTT IKCNSSNQIS SQHKRKLRSL
201: ILCPVNEQLF ATSSLDGMVS LWQLQPGRLA ASLLSTTDCL SQKQRRWGED MAWHPSGHTL FSVYTADDGD SQISILNLNK TRGVTFLENK PHVKGIINNI
301: KFMPWENTCF ATGGSDHAVV LWNESDDDEE NKWKSKTLHR NLHSAAVMGV DGMRNKNVVL SVGADKRIYG FDVQVGRADY KHQIEYKCMS VLSNPCDFNL
401: FMVQSGEPEK QLRLFDIRLR RTELHSFGWK QDSSESQSAL INQSWSPDGL YITSGSADPV IHVFDIRYNA RKPTQSIKAH QKRVFKAEWH YSQPLLISIS
501: SDLNIGLHKI S

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.