Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002273.1-P | Field mustard | nucleus | 99.49 | 99.49 |
| CDX84892 | Canola | nucleus | 17.17 | 6.65 |
| CDY45797 | Canola | nucleus | 17.17 | 6.51 |
| CDX92489 | Canola | cytosol | 15.15 | 4.9 |
| CDY42317 | Canola | nucleus | 14.14 | 4.79 |
| CDY44954 | Canola | nucleus | 13.64 | 4.6 |
| CDY35839 | Canola | nucleus | 15.15 | 3.68 |
Protein Annotations
| Gene3D:1.10.10.1340 | MapMan:15.3.3.2.6 | GO:A0A078DT02 | EnsemblPlants:CDX92490 | ProteinID:CDX92490 | ProteinID:CDX92490.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016592 |
| EnsemblPlantsGene:GSBRNA2T00154265001 | InterPro:IPR038089 | InterPro:Med31_sf | InterPro:Mediator_Med31 | PFAM:PF05669 | PANTHER:PTHR13186 |
| UniParc:UPI0004EF09CF | SEG:seg | : | : | : | : |
Description
BnaA10g15290DMediator of RNA polymerase II transcription subunit 31 [Source:Projected from Arabidopsis thaliana (AT5G19910) UniProtKB/Swiss-Prot;Acc:Q8VYB1]
Coordinates
chrLK031872:+:920958..922130
Molecular Weight (calculated)
23206.6 Da
IEP (calculated)
8.874
GRAVY (calculated)
-0.722
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPEEMVDD ASETPSTPKS TYKDPDDGRQ RFLLELEFIQ CLANPTYIHY LAQNRYFEDE AFIEYLKYLQ YWQRPEYIKF IMYPHCLYFL ELLQNPNFRS
101: AMAHPANKEL AHRQQFYYWK NYRNNRLKHI LPRPLPEPVA PQPPPVPSSS LPPAPSATAA PSPSPMQYNN MLAKNETRNM VSAGIDRRKR KYVLLSSS
101: AMAHPANKEL AHRQQFYYWK NYRNNRLKHI LPRPLPEPVA PQPPPVPSSS LPPAPSATAA PSPSPMQYNN MLAKNETRNM VSAGIDRRKR KYVLLSSS
001: MASPEEMGDD ASEIPSPPKN TYKDPDGGRQ RFLLELEFIQ CLANPTYIHY LAQNRYFEDE AFIGYLKYLQ YWQRPEYIKF IMYPHCLYFL ELLQNPNFRT
101: AMAHPANKEL AHRQQFYYWK NYRNNRLKHI LPRPLPEPVP PQPPVAPSTS LPPAPSATAA LSPALSPMQY NNMLSKNDTR NMGATGIDRR KRKKGI
101: AMAHPANKEL AHRQQFYYWK NYRNNRLKHI LPRPLPEPVP PQPPVAPSTS LPPAPSATAA LSPALSPMQY NNMLSKNDTR NMGATGIDRR KRKKGI
Arabidopsis Description
MED31SOH1 family protein [Source:TAIR;Acc:AT5G19910]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.