Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020075.1-P | Field mustard | nucleus | 95.06 | 95.71 |
| CDY42317 | Canola | nucleus | 86.2 | 86.5 |
| CDX92489 | Canola | cytosol | 65.42 | 62.75 |
| AT5G19920.1 | Thale cress | nucleus | 65.42 | 58.54 |
| CDY35839 | Canola | nucleus | 66.27 | 47.67 |
| CDY45797 | Canola | nucleus | 36.97 | 41.57 |
| CDX84892 | Canola | nucleus | 35.95 | 41.29 |
| CDX92490 | Canola | nucleus | 4.6 | 13.64 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | UniProt:A0A078I6A3 | EnsemblPlants:CDY44954 | ProteinID:CDY44954 | ProteinID:CDY44954.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | EnsemblPlantsGene:GSBRNA2T00081113001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EECFEE | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:WDR24 | SEG:seg | : | : | : | : |
Description
BnaA02g04590DBnaA02g04590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6A3]
Coordinates
chrLK032606:-:199384..202216
Molecular Weight (calculated)
66234.4 Da
IEP (calculated)
9.785
GRAVY (calculated)
-0.618
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGREEGNGG CAMAAATAMK KRRIEEEEAR TLASQIPDDK EGLLEFMDQR AKSIQLCKDQ ISILERKLAE ERKLMEDAET KFLQLDRVES DSFSKGKPKV
101: SGGTGSLLDE VKTANGTSST PYVRGEKMEY ETSAPRSRSE MDPSKLPPII LPPSFRRKAS SASVRSEVSE SAQAQPAVRR SYSFPREEAK RSHSTISNGV
201: VREVQARDSH TDKGFAKPRI RVSSNISGQA RQEKSEFNGN DELIALIGRS SLRPTIKSRT VAVLPSGHTK RMRSVAVSLS NRDLFATSAL DCVVHFWKLH
301: SNSRSSPTLF NTVNRVGLDQ KRWAEDIAWH PLRTELFSVY TADEGHAQIS TIYLNEARES CDSKFLKDRP HSKGLINRIM FTPWDDPCFI TGGCDHAVVL
401: WREQRERHAW KSRLLHRDLH SSSVMGVAGM RHNNLVLSCG DDRRLVGFDA RAEKTTFQHK LDNRCTNLLP NPRDVNLVMV HTRQLDRQLR LYDVRLPQTE
501: LFSFGWKQES SESQSALINQ SWSPDGLHIS SGSSDPVIHI FDIRYNAPSP SLSIKAHKKR VFKAEWQSSQ QLVSISSDLE IGIHKLW
101: SGGTGSLLDE VKTANGTSST PYVRGEKMEY ETSAPRSRSE MDPSKLPPII LPPSFRRKAS SASVRSEVSE SAQAQPAVRR SYSFPREEAK RSHSTISNGV
201: VREVQARDSH TDKGFAKPRI RVSSNISGQA RQEKSEFNGN DELIALIGRS SLRPTIKSRT VAVLPSGHTK RMRSVAVSLS NRDLFATSAL DCVVHFWKLH
301: SNSRSSPTLF NTVNRVGLDQ KRWAEDIAWH PLRTELFSVY TADEGHAQIS TIYLNEARES CDSKFLKDRP HSKGLINRIM FTPWDDPCFI TGGCDHAVVL
401: WREQRERHAW KSRLLHRDLH SSSVMGVAGM RHNNLVLSCG DDRRLVGFDA RAEKTTFQHK LDNRCTNLLP NPRDVNLVMV HTRQLDRQLR LYDVRLPQTE
501: LFSFGWKQES SESQSALINQ SWSPDGLHIS SGSSDPVIHI FDIRYNAPSP SLSIKAHKKR VFKAEWQSSQ QLVSISSDLE IGIHKLW
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.