Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002274.1-P | |
| Bra003362.1-P | |
| Bra020075.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19920.1 | Bra003362.1-P | AT3G59050.1 | 21798944 |
| AT5G19920.1 | Bra002274.1-P | AT5G19920.1 | 21798944 |
| AT5G19920.1 | Bra020075.1-P | AT5G19920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44954 | Canola | nucleus | 95.71 | 95.06 |
| Bra002274.1-P | Field mustard | nucleus | 66.72 | 68.01 |
| AT5G19920.1 | Thale cress | nucleus | 65.35 | 58.08 |
| Bra022749.1-P | Field mustard | nucleus | 36.54 | 39.08 |
| Bra002273.1-P | Field mustard | nucleus | 4.8 | 14.14 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | EnsemblPlantsGene:Bra020075 | EnsemblPlants:Bra020075.1 | EnsemblPlants:Bra020075.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0032008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M4DU82 |
| PFAM:PF00400 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00025432F5 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 |
| SEG:seg | : | : | : | : | : |
Description
AT5G19920 (E=5e-183) | transducin family protein / WD-40 repeat family protein
Coordinates
chrA02:-:4933132..4935854
Molecular Weight (calculated)
65932.2 Da
IEP (calculated)
9.785
GRAVY (calculated)
-0.605
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGREEGNGG CAMAAATAMK KRRIEEEEAR TLASQIPDDK EGLLEFMDQR AKSIQLCKDQ ISILERKLAE ERKLMEDAET KFLQLDRVES DSLSKAKPKV
101: SGGTGSLLDE VKTANGTSST PYVRGEKMEY ETSAPRARSE MDSLKLPPII LPPSFRRKAS VRSEVSESAQ AQPAVRRSYS FPREEAKRSH STISNGVVRE
201: VQARDSHIDK GFAKPRIRVS SNISGQARQE KSEFNGNDEL IALIGRSSLR PTIKTRTVAV LPSGHTKRMR SVAVSLSNRD LFATSALDCV VHFWKLHSNR
301: SSPTLFQTVN RVGLDQKRWA EDIAWHPHRS ELFSVYTADE GHAQISTIYL NEARESCDSK FLKDRPHSKG LINRIMFTPW DDPCFITGGC DHAVVLWREQ
401: RERHAWKSRL LHRDLHSSSV MGVAGMRHNN LVLSCGDDRR LVGFDARAEK TTFQHKLDNR CTNLLPNPRD VNLVMVHTRQ LDRQLRLYDV RLPQTELFSF
501: GWKQESSESQ SALINQSWSP DGLHISSGSS DPVIHIFDIR YNAPSPSLSI KAHKKRVFKA EWQSSQQLVS ISSDLEIGIH KLW
101: SGGTGSLLDE VKTANGTSST PYVRGEKMEY ETSAPRARSE MDSLKLPPII LPPSFRRKAS VRSEVSESAQ AQPAVRRSYS FPREEAKRSH STISNGVVRE
201: VQARDSHIDK GFAKPRIRVS SNISGQARQE KSEFNGNDEL IALIGRSSLR PTIKTRTVAV LPSGHTKRMR SVAVSLSNRD LFATSALDCV VHFWKLHSNR
301: SSPTLFQTVN RVGLDQKRWA EDIAWHPHRS ELFSVYTADE GHAQISTIYL NEARESCDSK FLKDRPHSKG LINRIMFTPW DDPCFITGGC DHAVVLWREQ
401: RERHAWKSRL LHRDLHSSSV MGVAGMRHNN LVLSCGDDRR LVGFDARAEK TTFQHKLDNR CTNLLPNPRD VNLVMVHTRQ LDRQLRLYDV RLPQTELFSF
501: GWKQESSESQ SALINQSWSP DGLHISSGSS DPVIHIFDIR YNAPSPSLSI KAHKKRVFKA EWQSSQQLVS ISSDLEIGIH KLW
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.