Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002274.1-P | Field mustard | nucleus | 88.24 | 94.41 |
| CDY35839 | Canola | nucleus | 89.87 | 67.4 |
| CDY42317 | Canola | nucleus | 64.38 | 67.35 |
| CDY44954 | Canola | nucleus | 62.75 | 65.42 |
| AT5G19920.1 | Thale cress | nucleus | 64.87 | 60.52 |
| CDY45797 | Canola | nucleus | 37.42 | 43.87 |
| CDX84892 | Canola | nucleus | 36.27 | 43.44 |
| CDX92490 | Canola | nucleus | 4.9 | 15.15 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | EnsemblPlants:CDX92489 | ProteinID:CDX92489 | ProteinID:CDX92489.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0032008 | EnsemblPlantsGene:GSBRNA2T00154264001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EEA0E3 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:WDR24 | SEG:seg | : | : | : | : |
Description
BnaA10g15280D
Coordinates
chrLK031872:+:917320..920883
Molecular Weight (calculated)
69117.1 Da
IEP (calculated)
8.971
GRAVY (calculated)
-0.513
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMKKPKVE QGEEANTLST QIPDDKEGLI DFMDQRANSI EALKDQLSNL ERKLSEERRL MADAEAKFLR VDRVENKKNV PGKTGSLLGI AEFWTERDNN
101: KIEYESSTPQ TPTEIKPLKM PSIILPPSFK RKASAPARPE ANETQHVATS ESNVPKEVRN GSEAKRSRTV VPNEVVRESQ SQAKPRIRVS TNIPGQAAQQ
201: EKSEFHGHEE LIALIGRSSL RATIESRTLA MIPSGHTKRM RSLALSPSNR DLFATSALDG VVHFWKLQSD SRSSATLFKT VNRVEVDQKR WAEDIAWHPH
301: NSALFSVYTA DEGHAQISAL YLNEARETCE SKFLKDRPHS KGLINRIMFT PWDDPCFITG GCDHAVVLWR EQCESNAWKS RLLHKDLHTS AVMGVAGMRH
401: NNLVLSCGDD RRFVGFDARE EKVTFKHRLD NKCTNLLPNP RDVNLVMLQT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
501: SSDPAIHIFD IRYNAASPSL SIKAHKKRVF KAEWHSSNQL LVSISSDLEI GIHKLCPKTQ FHLLWQEPVA IKSTVFGSPQ NESYIIFRLR LFSPGDYSFA
601: AVALGLLALF VY
101: KIEYESSTPQ TPTEIKPLKM PSIILPPSFK RKASAPARPE ANETQHVATS ESNVPKEVRN GSEAKRSRTV VPNEVVRESQ SQAKPRIRVS TNIPGQAAQQ
201: EKSEFHGHEE LIALIGRSSL RATIESRTLA MIPSGHTKRM RSLALSPSNR DLFATSALDG VVHFWKLQSD SRSSATLFKT VNRVEVDQKR WAEDIAWHPH
301: NSALFSVYTA DEGHAQISAL YLNEARETCE SKFLKDRPHS KGLINRIMFT PWDDPCFITG GCDHAVVLWR EQCESNAWKS RLLHKDLHTS AVMGVAGMRH
401: NNLVLSCGDD RRFVGFDARE EKVTFKHRLD NKCTNLLPNP RDVNLVMLQT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
501: SSDPAIHIFD IRYNAASPSL SIKAHKKRVF KAEWHSSNQL LVSISSDLEI GIHKLCPKTQ FHLLWQEPVA IKSTVFGSPQ NESYIIFRLR LFSPGDYSFA
601: AVALGLLALF VY
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.