Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44954 | Canola | nucleus | 86.5 | 86.2 |
| CDX92489 | Canola | cytosol | 67.35 | 64.38 |
| AT5G19920.1 | Thale cress | nucleus | 66.15 | 58.99 |
| CDY35839 | Canola | nucleus | 68.38 | 49.02 |
| CDY45797 | Canola | nucleus | 36.58 | 41.0 |
| CDX84892 | Canola | nucleus | 35.73 | 40.9 |
| CDX92490 | Canola | nucleus | 4.79 | 14.14 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | UniProt:A0A078HWX5 | EnsemblPlants:CDY42317 | ProteinID:CDY42317 | ProteinID:CDY42317.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | EnsemblPlantsGene:GSBRNA2T00074558001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EEBB6B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:WDR24 | SEG:seg | : | : | : | : |
Description
BnaC02g09230DBnaC02g09230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWX5]
Coordinates
chrLK032520:-:246345..249592
Molecular Weight (calculated)
66412.5 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.687
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGREEGNGG CAMEMAAAMK KRRMEEEDNP TQIPDDKEGL LEFMDQRAKS IQLCKDQISI LERKLAEERK LMEDAETKFL QLDRVESDTF SKAKPKVSGK
101: TEFWSEGDKV NTANGTSTSH ARGEKMEYET STPHPRSEKD PSKLPSIILP PSFKRKVSAS VRSEVSQSAQ AQPAVRRSYS FPREEAKRSH STISNGVVRE
201: VQARDSHTDK GFAKPRIRVS SNISGQARQE KSEFNGNDEL IALIGRSSLR PTIKSRAVAM LPSCHTKRMR SVAVSLSNRD LFATSALDCV VHFWKLHSNS
301: RSSPTLFNTV NRVGLDQKRW AEDIAWHPHR SELFSVYTAD EGHAQVSALY LNEARESCES KFLKDRPHSK GLINRIMFTP WDDPCFITSG CDHAVVLWRE
401: QQRERNAWKS RLLHKDLHSS SVMGVAGMRH NNLVLSCGDD RRFVGFDARA EKTTFQHKLD NRCTNLLPNP RDVNLVMVHT RQLDRQLRLY DVRLPQTELF
501: SFGWKQESSE SQSALINQSW SPDGLHISSG SSDPVIHIFD IRYNAPSPSV SIKAHKKRVF KAEWQSSQQL VSISSDLEIG IHKLW
101: TEFWSEGDKV NTANGTSTSH ARGEKMEYET STPHPRSEKD PSKLPSIILP PSFKRKVSAS VRSEVSQSAQ AQPAVRRSYS FPREEAKRSH STISNGVVRE
201: VQARDSHTDK GFAKPRIRVS SNISGQARQE KSEFNGNDEL IALIGRSSLR PTIKSRAVAM LPSCHTKRMR SVAVSLSNRD LFATSALDCV VHFWKLHSNS
301: RSSPTLFNTV NRVGLDQKRW AEDIAWHPHR SELFSVYTAD EGHAQVSALY LNEARESCES KFLKDRPHSK GLINRIMFTP WDDPCFITSG CDHAVVLWRE
401: QQRERNAWKS RLLHKDLHSS SVMGVAGMRH NNLVLSCGDD RRFVGFDARA EKTTFQHKLD NRCTNLLPNP RDVNLVMVHT RQLDRQLRLY DVRLPQTELF
501: SFGWKQESSE SQSALINQSW SPDGLHISSG SSDPVIHIFD IRYNAPSPSV SIKAHKKRVF KAEWQSSQQL VSISSDLEIG IHKLW
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.