Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92489 | Canola | cytosol | 67.4 | 89.87 |
| CDY42317 | Canola | nucleus | 49.02 | 68.38 |
| CDY44954 | Canola | nucleus | 47.67 | 66.27 |
| AT5G19920.1 | Thale cress | nucleus | 48.65 | 60.52 |
| CDY45797 | Canola | nucleus | 27.94 | 43.68 |
| CDX84892 | Canola | nucleus | 27.08 | 43.25 |
| CDX92490 | Canola | nucleus | 3.68 | 15.15 |
Protein Annotations
| Gene3D:1.10.10.1340 | MapMan:15.3.3.2.6 | Gene3D:2.130.10.10 | GO:A0A078HEH0 | UniProt:A0A078HEH0 | EnsemblPlants:CDY35839 |
| ProteinID:CDY35839 | ProteinID:CDY35839.1 | ncoils:Coil | GO:GO:0001104 | GO:GO:0003674 | GO:GO:0003712 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016592 | GO:GO:0032008 |
| EnsemblPlantsGene:GSBRNA2T00059359001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:IPR038089 | InterPro:Med31_sf |
| InterPro:Mediator_Med31 | PFAM:PF00400 | PFAM:PF05669 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF131 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDFF23 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | SEG:seg | : | : |
Description
BnaC09g37710DBnaC09g37710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEH0]
Coordinates
chrLK032362:+:193167..198217
Molecular Weight (calculated)
92755.6 Da
IEP (calculated)
9.590
GRAVY (calculated)
-0.571
Length
816 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMKKPKVEQ GEEAKTLSTQ IPDDKEGLID FMDQRANSIE ALKDQLSNLE RKLAEERRLM ADAEAKFLRV DRVENKKNVP GKTGSLLGIA EFWTERDKVK
101: KTATNGTSTP HPPSEMKPLK MPSIILPPSF KRKASAPARP EASETAQHVA TTDSDVPKEV RNGSETKRSR TVVPNEVVRE TQSQAKPRIR VSSNIPGQAA
201: QQEKSEFHGH EELIALIGRS SLRATIESRT LAMLPSGHTK RMRSLALSPS NRDLFATSAL DGVVHFWKLQ SDSRSSATLF KTINRVEVDQ KRWAEDIAWH
301: PHKSALFSVY TADEGHAQIS ALYLNEARET CESKFLKDRP HIKGLINRIM FTPWDDPCFI TGGCDHAVVL WREQCENNAW KSRLLHKDLH TSAVMGVAGM
401: RHNNLVLSCG DDRRFVGFDA REEKVTFKHR LDNKCTNLLP NPRDVNLVML QTRQLDRQLR LYDVRLPQTE LFSFGWKQES SESQSALINQ SWSPDGLHIS
501: SGSSDPAIHI FDIRYNAASP SLSIKAHKKR VFKAEWHSSN QLLVSISSDL EIGIHKLCPK TQFQLLWQEP VAIKSTVFGS PQNGIVLNHM IFRLRLFSPG
601: DYSQPSPWAC LPSSVSVSSM ASPEEMVDAS ETPSTPKSTY KDPDVGRQRF LLELEFIQCL ANPTYIHYLA QNRYFEDEAF IEYLKYLQYW QRPEYIKFIM
701: YPHCLYFLEL LQNPNFRSAM AHPANKELAH RQQFYYWKNY RNNRLKHILP RPLPEPVAPQ PPPVPSSSLP PAPPATAAPS PSPMQYNNML AKNETRNMVS
801: AGIDRRKRKY VLLSSS
101: KTATNGTSTP HPPSEMKPLK MPSIILPPSF KRKASAPARP EASETAQHVA TTDSDVPKEV RNGSETKRSR TVVPNEVVRE TQSQAKPRIR VSSNIPGQAA
201: QQEKSEFHGH EELIALIGRS SLRATIESRT LAMLPSGHTK RMRSLALSPS NRDLFATSAL DGVVHFWKLQ SDSRSSATLF KTINRVEVDQ KRWAEDIAWH
301: PHKSALFSVY TADEGHAQIS ALYLNEARET CESKFLKDRP HIKGLINRIM FTPWDDPCFI TGGCDHAVVL WREQCENNAW KSRLLHKDLH TSAVMGVAGM
401: RHNNLVLSCG DDRRFVGFDA REEKVTFKHR LDNKCTNLLP NPRDVNLVML QTRQLDRQLR LYDVRLPQTE LFSFGWKQES SESQSALINQ SWSPDGLHIS
501: SGSSDPAIHI FDIRYNAASP SLSIKAHKKR VFKAEWHSSN QLLVSISSDL EIGIHKLCPK TQFQLLWQEP VAIKSTVFGS PQNGIVLNHM IFRLRLFSPG
601: DYSQPSPWAC LPSSVSVSSM ASPEEMVDAS ETPSTPKSTY KDPDVGRQRF LLELEFIQCL ANPTYIHYLA QNRYFEDEAF IEYLKYLQYW QRPEYIKFIM
701: YPHCLYFLEL LQNPNFRSAM AHPANKELAH RQQFYYWKNY RNNRLKHILP RPLPEPVAPQ PPPVPSSSLP PAPPATAAPS PSPMQYNNML AKNETRNMVS
801: AGIDRRKRKY VLLSSS
001: MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
101: ILGIAEFWNE GNKTKTANEN STPQSPSEME SLKLPSIILP PSFKRRASAT VRAEVNETTQ AQPMATRDYN IPREDTCGPE AKRPRSIPDE VVRETQDRDK
201: ETQPMATRGY DVPKEDKSGP EARRLRSIPD EVVRESQGRD NAAQPMATRD SNVPKEDKSG LDKRSRSIPN EVAQAPDNHT NKDLAKPRIR VSSNISQQGQ
301: QEKSEFRGHD ELIALIGRSS LRPTIEGRTA GMLPSCHTKR MRSLALSPSN RELFATSALD GAVHFWKLQS DRSTATLFKT VNRVAVDQKK WAEDIAWHPH
401: KNALFSVYTA DDGHPQISAI YLNEAGERCE SQFMEDRPHS KGLINRIMFT PWDDPCFITG GSDHAVVLWR DQCENNAWKP TLLHRDLHSS AVMGVTGMRH
501: NNHVLSCGDD RRFVGFDARE EKVTFKHRLD NRCTNIMPNP RDVNLVMVNT RQLDRQLRLY DVRLPQTELF SFGWKQESSE SQSALINQSW SPDGLHISSG
601: SADPVIHIFD IRYNAPSPSL SMKAHKKRVF KAEWHSSYPL LVSISSDLAI GIHKLW
Arabidopsis Description
At5g19920 [Source:UniProtKB/TrEMBL;Acc:Q8GX62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.