Factsheet for Zm00001d012839_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0851600-02	Rice	nucleus, plastid	83.76	51.58
KXG37112	Sorghum	nucleus	93.16	39.49
Zm00001d034862_P003	Maize	nucleus	91.03	38.38
TraesCS4A01G328700.2	Wheat	nucleus	79.49	34.51
TraesCS5D01G545100.1	Wheat	nucleus	79.06	34.2
GSMUA_Achr8P00320_001	Banana	cytosol	74.79	33.91
TraesCS5B01G542700.2	Wheat	nucleus	79.49	32.07
VIT_17s0000g00230.t01	Wine grape	nucleus	70.94	31.56
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	77.35	31.53
AT5G50970.1	Thale cress	nucleus	67.09	30.66
CDX84892	Canola	nucleus	65.81	30.14
KRH63866	Soybean	nucleus	67.09	29.46
CDY45797	Canola	nucleus	65.38	29.31
KRH54087	Soybean	nucleus	66.67	29.27
KRH41054	Soybean	nucleus	35.47	28.92
Bra022749.1-P	Field mustard	nucleus	65.81	28.26
PGSC0003DMT400036938	Potato	nucleus	63.68	26.33
Os08t0511500-01	Rice	cytosol, extracellular	8.55	19.8
Zm00001d012840_P001	Maize	nucleus	0.0	0.0
Zm00001d013894_P001	Maize	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A1D6GD61	ProteinID:AQK61562.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000842FD8D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:WDR24	EnsemblPlantsGene:Zm00001d012839	EnsemblPlants:Zm00001d012839_P002	EnsemblPlants:Zm00001d012839_T002	:

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr5:-:983375..990618

Molecular Weight (calculated)

26398.4 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.372

Length

234 amino acids

Sequence
(BLAST)

001: MTNLISGQRK VTFLPEKPHT KGIINNISFM PWSDACFVTG GSDHAVILWE DKDDSWKPKR VHKDFHSAAV MGVAGLQQKR TILSVGCDKR IIGFDLSAGR
101: TEFKNLLDSK CMSVLANPCD FNLYMVQTGD PGRQLRLFDV RLRQTEVHAF GWKQESSESQ SALINQSWSP DGWYVSSGSA DPVIHIFDIR HHGQNPCQSV
201: EAHQKRVFKA VWHQTLPYLT SISSDLNIGI HKYS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.