Factsheet for PGSC0003DMT400036938

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118220.1.1	Tomato	nucleus	77.39	94.6
Zm00001d012839_P002	Maize	cytosol	26.33	63.68
Os03t0851600-02	Rice	nucleus, plastid	38.87	57.89
KRH54087	Soybean	nucleus	53.36	56.66
VIT_17s0000g00230.t01	Wine grape	nucleus	52.65	56.65
KRH63866	Soybean	nucleus	52.3	55.53
Os08t0511500-01	Rice	cytosol, extracellular	9.72	54.46
GSMUA_Achr8P00320_001	Banana	cytosol	47.88	52.52
KRH41054	Soybean	nucleus	26.15	51.57
AT5G50970.1	Thale cress	nucleus	46.11	50.98
CDX84892	Canola	nucleus	45.41	50.29
CDY45797	Canola	nucleus	45.58	49.43
Bra022749.1-P	Field mustard	nucleus	45.76	47.52
KXG37112	Sorghum	nucleus	43.99	45.11
Zm00001d034862_P003	Maize	nucleus	44.17	45.05
TraesCS4A01G328700.2	Wheat	nucleus	41.34	43.41
TraesCS5D01G545100.1	Wheat	nucleus	41.34	43.25
TraesCS5B01G542700.2	Wheat	nucleus	41.7	40.69
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	40.46	39.9
Zm00001d012840_P001	Maize	nucleus	13.78	29.1
Zm00001d013894_P001	Maize	nucleus	8.66	24.87

Protein Annotations

EntrezGene:102579586	Gene3D:2.130.10.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1B4J0	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400014242
PGSC:PGSC0003DMG400014242	EnsemblPlants:PGSC0003DMT400036938	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002966E9D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	RefSeq:XP_006341474.1	SEG:seg	:	:	:

Description

Nucleotide binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014242]

Coordinates

chr3:-:57785214..57791889

Molecular Weight (calculated)

63611.4 Da

IEP (calculated)

7.754

GRAVY (calculated)

-0.569

Length

566 amino acids

Sequence
(BLAST)

001: MWEEEAKGIR RDEEEALLDL IEQRTKNVEK IGRAIAYYTC ELEQKEKNLE EAQQQLARLR AQAIVATSTS YHGNDLNLVK VERRSMSPIQ ISDDSSESLS
101: ECEPQPDKDN TVPLQKSSTL DKKLARPFQK NNDDSGKPPR AKPLLIIPDM KPKGSLHLKM EESSPTPCFS DSCAGGSVFS FRNTRIVRSK ADKSVKTPPD
201: TGAADIEHKG TKRKSEQIEH KELIPLIGRS SSASKLQCQT TSVIPSQHTR KLRNIVLCPT NDQLFASSAL DGVVNLWQVQ DRGSSANLLS STDCFTHKCK
301: RWPEDVAWHP EGSSLFSVYR ADEGDSQISI LNLNKRKENM QVNFLEDKPH VKGIINNIEF MPWKEGCFVT GGCDHAVILW TNKDGEHSWK PKELHSQHSS
401: AVMGVAGLQH KKVVMSAGAD KRIFGFDLPA QRIGYKHQVE SKCMSVLPNP CDLNLFMIQT GTLEKQLRLF DFRSREAETH SFGWKQESSD SHSALINQAW
501: SPDGLYITSG SVDPAIHIFD IRYNSHEPCL SIRAHNRQVF KAVWHHALPV LISISSDLNI GFHKIV

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.