Factsheet for VIT_17s0000g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012839_P002	Maize	cytosol	31.56	70.94
KRH54087	Soybean	nucleus	66.92	66.04
KRH63866	Soybean	nucleus	66.54	65.67
Os03t0851600-02	Rice	nucleus, plastid	44.87	62.11
AT5G50970.1	Thale cress	nucleus	60.08	61.72
CDX84892	Canola	nucleus	59.7	61.45
GSMUA_Achr8P00320_001	Banana	cytosol	59.32	60.47
KRH41054	Soybean	nucleus	32.7	59.93
CDY45797	Canola	nucleus	58.94	59.39
Bra022749.1-P	Field mustard	nucleus	60.46	58.35
Solyc12g042200.1.1	Tomato	nucleus	62.74	56.8
Os08t0511500-01	Rice	cytosol, extracellular	10.65	55.45
PGSC0003DMT400036938	Potato	nucleus	56.65	52.65
Zm00001d034862_P003	Maize	nucleus	52.09	49.37
KXG37112	Sorghum	nucleus	51.33	48.91
TraesCS5D01G545100.1	Wheat	nucleus	49.24	47.87
TraesCS4A01G328700.2	Wheat	nucleus	48.86	47.68
Solyc03g118220.1.1	Tomato	nucleus	41.25	46.87
TraesCS5B01G542700.2	Wheat	nucleus	50.38	45.69
HORVU5Hr1G122810.1	Barley	cytosol, mitochondrion, nucleus	48.86	44.77
Zm00001d012840_P001	Maize	nucleus	15.02	29.48
Zm00001d013894_P001	Maize	nucleus	9.51	25.38

Protein Annotations

EntrezGene:100255948	wikigene:100255948	Gene3D:2.130.10.10	MapMan:35.2	ProteinID:CBI15757	ProteinID:CBI15757.3
ncoils:Coil	UniProt:D7SH77	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0032008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100255948	wikigene:LOC100255948	PFAM:PF00400	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF131	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001985053	ArrayExpress:VIT_17s0000g00230
EnsemblPlantsGene:VIT_17s0000g00230	EnsemblPlants:VIT_17s0000g00230.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:WDR24	RefSeq:XP_002280902	RefSeq:XP_002280902.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:145102..156724

Molecular Weight (calculated)

59142.5 Da

IEP (calculated)

9.818

GRAVY (calculated)

-0.567

Length

526 amino acids

Sequence
(BLAST)

001: MNARKPKVEV DDRITTEEDG EENSRDEQEE ALVALIEHRT KEVEHIRKRI TYYQSQLQEA EKKLLDSQAQ LGRLRSKDNL VSSRSPLDNG TKKVKVERRS
101: TSPLQLQSRP ELLIPAVNPK ISQPVKLADA GTRARSPTPN HAHSVGKVKW EKSHGSSSER EMVEVQDKGT KRKFEPKEHK ELITSIATSS SPVIVRCYSS
201: SHISSQHKRK LRSLVLCPVN NQLFATSALD GIVNLWQIQA RGSGASLLSA TDCLSQKQRR WPEDMAWHPE GNSIFSVYNA DDGDSQISVL NLNRTKGGAR
301: VTFLEEKPHV KGIINSISFM PWENPCFVTG GSDHAVVLWN EKDEEKLWKP KALHRNMHSS AVMGVAGMQQ KQIVLSVGAD KRIIGLDLHT GRTDFKHQID
401: SKCMSIVPNP CDFNLYMVQA GTPGKQLRLF DIRLRQTELH AFGWKQESSD SLSALINQTW SPDGLYITSG SVDPVIHIFD IRSYAHKPSQ SIKAHQKRVF
501: KAIWHHSLPL LISISSDLNI GLHKLS

Best Arabidopsis Sequence Match ( AT5G50970.1 )
(BLAST)

001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.