Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118210.2.1 | Tomato | cytosol | 13.94 | 66.94 |
| VIT_17s0000g00230.t01 | Wine grape | nucleus | 56.8 | 62.74 |
| KRH54087 | Soybean | nucleus | 57.31 | 62.48 |
| KRH63866 | Soybean | nucleus | 56.28 | 61.35 |
| Solyc03g118220.1.1 | Tomato | nucleus | 46.82 | 58.75 |
| CDX84892 | Canola | nucleus | 49.4 | 56.16 |
| AT5G50970.1 | Thale cress | nucleus | 49.4 | 56.05 |
| KRH41054 | Soybean | nucleus | 27.54 | 55.75 |
| CDY45797 | Canola | nucleus | 48.36 | 53.83 |
| Bra022749.1-P | Field mustard | nucleus | 49.05 | 52.29 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4DF14 | PFAM:PF00400 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF131 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc12g042200.1 | EnsemblPlants:Solyc12g042200.1.1 | UniParc:UPI000276A99E |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | : |
Description
No Description!
Coordinates
chr12:-:40624129..40638107
Molecular Weight (calculated)
65537.1 Da
IEP (calculated)
10.104
GRAVY (calculated)
-0.673
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKPPNPKTV NGEEDNGRRM EEQDRKEQEE ALIALIEHRT KEVEHLRQRL TYYKSQYHEA ENRLEETQLK LARLRGRENI AASTSSRGNG ENPMTSKRRS
101: TSPIQINEGP FHSLSESKRH RIQDSNQPLR KSPVPDRKMA SPFQKNDNSS RSVPQGKPLL VIPDVKPRVS QPLKIIESGP KISSASDSQV GGSGFPHVTS
201: MTKLKADKSH RTPEKEASEL QPKGTKRKFE QKEHRELIPL IGSYSSASMV RCQTSCVISS QHKRKLRTII SCPTNDQLFA SSALDGLVNL WQVHGRGSTA
301: NLLSSTDCLS SKHRRWPEDL AWHPEGHSLF CAYSADGGDS QISILNLNKG KEKMRVSFLE DKPHVKGVIN NMIFMPWEDI LFVTGGSDHA VIMWSNKDGE
401: NSWKPKALHR SLHSSAVMGV AGLQHKKVVM SAGADKRIIG FDLLAQRAEY KHQIENKCMS VLPNPCDFNL FMVQTGTIER QLRLFDYRLR QTEVQAFGWK
501: QESSDSQSAL INQAWSPDGL YITSGSVDPV IHIFDIRYNS HKPSQSIKAH QKRVFKAIWH HAVPLLISIS SDLNIGLHKI V
101: TSPIQINEGP FHSLSESKRH RIQDSNQPLR KSPVPDRKMA SPFQKNDNSS RSVPQGKPLL VIPDVKPRVS QPLKIIESGP KISSASDSQV GGSGFPHVTS
201: MTKLKADKSH RTPEKEASEL QPKGTKRKFE QKEHRELIPL IGSYSSASMV RCQTSCVISS QHKRKLRTII SCPTNDQLFA SSALDGLVNL WQVHGRGSTA
301: NLLSSTDCLS SKHRRWPEDL AWHPEGHSLF CAYSADGGDS QISILNLNKG KEKMRVSFLE DKPHVKGVIN NMIFMPWEDI LFVTGGSDHA VIMWSNKDGE
401: NSWKPKALHR SLHSSAVMGV AGLQHKKVVM SAGADKRIIG FDLLAQRAEY KHQIENKCMS VLPNPCDFNL FMVQTGTIER QLRLFDYRLR QTEVQAFGWK
501: QESSDSQSAL INQAWSPDGL YITSGSVDPV IHIFDIRYNS HKPSQSIKAH QKRVFKAIWH HAVPLLISIS SDLNIGLHKI V
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.