Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0851600-02 | Rice | nucleus, plastid | 57.85 | 18.42 |
| GSMUA_Achr8P00320_001 | Banana | cytosol | 60.33 | 14.15 |
| Solyc12g042200.1.1 | Tomato | nucleus | 66.94 | 13.94 |
| KXG37112 | Sorghum | nucleus | 58.68 | 12.86 |
| TraesCS4A01G328700.2 | Wheat | nucleus | 56.2 | 12.62 |
| TraesCS5D01G545100.1 | Wheat | nucleus | 56.2 | 12.57 |
| TraesCS5B01G542700.2 | Wheat | nucleus | 56.2 | 11.72 |
| HORVU5Hr1G122810.1 | Barley | cytosol, mitochondrion, nucleus | 55.37 | 11.67 |
| Os08t0511500-01 | Rice | cytosol, extracellular | 0.83 | 0.99 |
| Solyc03g118220.1.1 | Tomato | nucleus | 1.65 | 0.43 |
| Zm00001d013894_P001 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032008 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:K4BLX2 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF131 | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc03g118210.2 | EnsemblPlants:Solyc03g118210.2.1 | UniParc:UPI0002767C29 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:WDR24 | : | : | : |
Description
No Description!
Coordinates
chr3:-:67148513..67149189
Molecular Weight (calculated)
13893.3 Da
IEP (calculated)
6.413
GRAVY (calculated)
-0.365
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEDSHREP EIMTLEKQLR LFDFRSREAE IHTFGWKQES SDSHSALINQ AWSPDGLYIT SGSVDPAIHI FDIRYNSHEP CLSIRAHNRR VFRAVWHHTL
101: PVLISISSDL NIGFHNIASG A
101: PVLISISSDL NIGFHNIASG A
001: MSELCTNPKK PKLKEEDEEE EANVSCREEQ EEVLVALVEH RSNEIERLNN HISNYQTKLI EAERSLQNSK AKLAQLRGVA VPSISGAKKD HKPLKTLRNV
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
101: NVSEDYASPS PSKTLRPSDS SDHPRSSCGS SVSKAKTVVV KQKSETSRDS PNVKDRGIKR KFEQKEHKEL IRLIARNSSP TTIKCHTSNQ ISSQHKRKLR
201: SLILCPVNEQ LFATSSLDGM VSLWQLQPGR LVASLLSTTD CLSRKQRRWA EDMAWHPSGN TLFSVYTADD GDSQISILNL NKTREVTFLE NKPHVKGIIN
301: NIKFMPWENT CFVTGGSDHA VVLWNESDDE ENKWKSKPLH RNLHSAAVMG VDGMKNKNVI LSVGADKRIY GFDVQVGRAD YKHQIDYKCM SVLANPCDFN
401: LFMVQSGEPE KQLRLFDIRL RKTELHSFGW KQDSSESQSA LINQSWSPDG LYITSGSVDP VIHVFDIRYN ARKPTQSIKA HQKRVFKAEW HYSQPLLISI
501: SSDLNIGLHK IS
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q683G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.