Factsheet for Bra013249.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	Bra010128.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra029240.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra035878.1-P	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015068.1-P	Field mustard	nucleus	92.08	91.55
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	87.07	89.31
AT3G24620.1	Thale cress	nucleus	89.96	89.1
CDX93028	Canola	nucleus	73.36	80.17
Solyc07g032730.2.1	Tomato	nucleus	50.39	63.81
VIT_09s0002g04310.t01	Wine grape	cytosol	54.63	62.33
Bra003536.1-P	Field mustard	nucleus	56.76	57.31
KRH39304	Soybean	nucleus	57.14	56.92
Bra021162.1-P	Field mustard	nucleus	47.49	56.68
KRH48369	Soybean	mitochondrion	60.23	55.52
PGSC0003DMT400040374	Potato	nucleus	50.0	55.11
Bra020048.1-P	Field mustard	nucleus	52.51	55.06
Bra006510.1-P	Field mustard	cytosol	51.74	54.92
PGSC0003DMT400001020	Potato	nucleus	58.11	54.23
Solyc12g007150.1.1	Tomato	nucleus	57.34	53.51
Bra018956.1-P	Field mustard	nucleus	53.86	52.05
Bra030396.1-P	Field mustard	nucleus	53.47	51.58
Bra002246.1-P	Field mustard	plastid	50.58	50.68
Bra027189.1-P	Field mustard	nucleus	51.35	50.19
Bra004945.1-P	Field mustard	nucleus, plastid	34.75	39.13
Bra000971.1-P	Field mustard	nucleus	35.14	38.08
Bra037342.1-P	Field mustard	cytosol	34.94	37.95
Bra015010.1-P	Field mustard	cytosol	37.84	35.83
Bra009152.1-P	Field mustard	cytosol, plastid	39.96	34.79
Bra009621.1-P	Field mustard	nucleus	36.68	33.93
Bra007183.1-P	Field mustard	cytosol, plastid	37.07	33.63
Bra005323.1-P	Field mustard	nucleus	31.85	32.93
Bra005322.1-P	Field mustard	nucleus	22.01	29.08
Bra021161.1-P	Field mustard	nucleus	3.09	12.03

Protein Annotations

EnsemblPlants:Bra013249.1	EnsemblPlants:Bra013249.1-P	EnsemblPlantsGene:Bra013249	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI0002540824	UniProt:M4D9T9	MapMan:27.4.3.1	:	:

Description

AT3G24620 (E=2e-252) ATROPGEF8, ROPGEF8 | ROPGEF8; Rho guanyl-nucleotide exchange factor

Coordinates

chrA03:-:19623928..19627223

Molecular Weight (calculated)

58019.8 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.567

Length

518 amino acids

Sequence
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSPSTKQQQ SQTLVLENGD SHLVESNTPE SQNSDSLAES PVESIPPMIS PLTRPGKRPD RQQADTDMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSKQTNKD GVCTEIMVTR QRGDLLMNIP ALRKLDTMLI
201: DTLDNFKGHN EFYYVSRDSE EGKQASNARS NDKWWLPPVK VPPGGLSDPA RRMLYFQKDS VTQVQKAAMA INAQVLSEMA IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPAQFLSMMD LSTEHKVLDL KNKIEASVVI WKRKLHVKDS KSSWGSAVSL EKRELFEERA ETILVFLKQK FPGLPQSSLD ISKIQFNKDI
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD SLALKQALLA EETPDGGRTE TDSESPGSSN SGEETEKLDR QHSKTLFDFM GWSDKPTTPP SVTPKKLSYL
501: EKLENFNGFR SPKDRNLS

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.