Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48369 | Soybean | mitochondrion | 94.42 | 87.37 |
| Solyc07g032730.2.1 | Tomato | nucleus | 53.65 | 68.22 |
| GSMUA_Achr2P09130_001 | Banana | cytosol | 50.96 | 67.77 |
| GSMUA_Achr5P06900_001 | Banana | cytosol | 54.81 | 67.7 |
| GSMUA_Achr6P14020_001 | Banana | cytosol | 55.0 | 66.36 |
| VIT_09s0002g04310.t01 | Wine grape | cytosol | 55.77 | 63.88 |
| GSMUA_Achr4P10530_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.12 | 62.88 |
| KRH44350 | Soybean | nucleus | 54.62 | 62.56 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 50.19 | 59.86 |
| OQU84790 | Sorghum | cytosol | 50.19 | 59.32 |
| PGSC0003DMT400040374 | Potato | nucleus | 53.46 | 59.15 |
| GSMUA_Achr3P15410_001 | Banana | nucleus | 55.38 | 58.06 |
| KRH23439 | Soybean | nucleus | 59.42 | 57.87 |
| KRH09881 | Soybean | cytosol | 59.23 | 57.79 |
| CDY03296 | Canola | nucleus | 36.73 | 57.7 |
| CDY46477 | Canola | nucleus | 57.69 | 57.58 |
| CDX77402 | Canola | nucleus | 57.5 | 57.39 |
| Bra015068.1-P | Field mustard | nucleus | 57.5 | 57.39 |
| Bra013249.1-P | Field mustard | nucleus, plastid | 56.92 | 57.14 |
| Bra036671.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 55.38 | 57.03 |
| GSMUA_Achr3P03410_001 | Banana | nucleus | 55.0 | 56.52 |
| AT4G13240.1 | Thale cress | nucleus | 56.15 | 56.48 |
| CDY03297 | Canola | mitochondrion | 56.73 | 56.41 |
| AT3G24620.1 | Thale cress | nucleus | 56.54 | 56.21 |
| Zm00001d053307_P002 | Maize | cytosol, plastid | 52.12 | 56.11 |
| CDY39783 | Canola | mitochondrion | 56.54 | 56.0 |
| KRH47282 | Soybean | nucleus | 57.88 | 55.95 |
| PGSC0003DMT400001020 | Potato | nucleus | 58.08 | 54.41 |
| Solyc12g007150.1.1 | Tomato | nucleus | 57.5 | 53.87 |
| TraesCS6D01G183300.1 | Wheat | mitochondrion | 52.69 | 53.83 |
| TraesCSU01G211800.1 | Wheat | cytosol | 33.65 | 53.68 |
| Os02t0272300-01 | Rice | plasma membrane | 52.5 | 53.22 |
| HORVU6Hr1G050860.4 | Barley | mitochondrion | 51.35 | 53.08 |
| TraesCSU01G217800.1 | Wheat | cytosol | 34.42 | 52.65 |
| TraesCSU01G211700.1 | Wheat | cytosol | 34.42 | 52.65 |
| Zm00001d016001_P002 | Maize | mitochondrion | 52.31 | 50.94 |
| CDX93028 | Canola | nucleus | 38.65 | 42.41 |
| KRH15734 | Soybean | cytosol | 21.15 | 42.31 |
| KRH73109 | Soybean | nucleus | 40.77 | 38.06 |
| KRH65102 | Soybean | nucleus | 35.19 | 38.05 |
| KRG94270 | Soybean | mitochondrion | 8.08 | 37.84 |
| KRH24128 | Soybean | cytosol | 40.77 | 37.32 |
| KRH00737 | Soybean | nucleus, plastid | 36.73 | 37.3 |
| KRH29101 | Soybean | cytosol, plastid | 40.58 | 37.28 |
| KRH40457 | Soybean | cytosol | 36.35 | 36.91 |
| KRH00070 | Soybean | nucleus | 41.92 | 35.56 |
| KRH15022 | Soybean | nucleus | 38.08 | 35.29 |
| KRG97804 | Soybean | nucleus | 40.19 | 35.24 |
| KRH48179 | Soybean | nucleus | 25.38 | 35.2 |
| KRH31060 | Soybean | nucleus | 40.38 | 35.12 |
| KRH75747 | Soybean | nucleus | 39.23 | 34.87 |
| KRH65969 | Soybean | nucleus | 40.0 | 34.44 |
| KRH07751 | Soybean | cytosol, nucleus, plastid | 34.04 | 31.89 |
| KRH07240 | Soybean | cytosol, nucleus, plastid | 34.04 | 31.83 |
| KRH76428 | Soybean | mitochondrion, nucleus | 34.23 | 31.62 |
| KRH39757 | Soybean | mitochondrion, nucleus | 33.27 | 30.73 |
| KRH49210 | Soybean | nucleus, plastid | 41.92 | 30.49 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | EntrezGene:100778231 | MapMan:27.4.3.1 | EMBL:ACUP02005930 | EnsemblPlantsGene:GLYMA_09G191900 |
| GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| GO:GO:0065009 | UniProt:I1L4J5 | InterPro:IPR005512 | EnsemblPlants:KRH39304 | ProteinID:KRH39304 | ProteinID:KRH39304.1 |
| PFAM:PF03759 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | InterPro:RopGEF |
| UniParc:UPI000294D678 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:41657457..41661234
Molecular Weight (calculated)
58730.3 Da
IEP (calculated)
5.230
GRAVY (calculated)
-0.563
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAFHHQIS MEKSKSFHFR KMFEIPGKHI HGLFDKDHDE AGESDSKIYS KSFESRSSLD HHTFEIQFNS DHSPTASLGI EAPKMPPKPP TEADLMKERF
101: AKLLLGEDMS GAGNGVSSAL ALSNAITNLA ASVFGEQSKL GPMPSERKAR WRKEIEWLLS VTDYIVEFAP SQQIAKDGTS MEIMTTRQRT DLLMNIPALR
201: KLDAMLIDTL DNFRDQNEFW YVSKNDENSE VNSNSQRKSD KWWLPTVKVP PTGLSEPAGK WIQFQKDNVN QVLKAAMAIN AQILSEMEIP ENYIESLPKN
301: GRESLGESVY KSITVEYFDP GQFLSTMDMS TEHKVLDLKN RIEASIVIWR RKMTNKDSKS AWSSAVSIEK RELFEERAET ILLMLKHQFP GLPQSSLDIS
401: KIQYNKDVGQ AILESYSRVI ESLAYTVMSR IDDVLYADSV TKNPSLAVSS RRYSLDSVPV AEQTSPNSGD EISNLKFSET PPSMTLSDVM GWSSTNEGSD
501: LKTNSAGDLE EYEKEKYEKV
101: AKLLLGEDMS GAGNGVSSAL ALSNAITNLA ASVFGEQSKL GPMPSERKAR WRKEIEWLLS VTDYIVEFAP SQQIAKDGTS MEIMTTRQRT DLLMNIPALR
201: KLDAMLIDTL DNFRDQNEFW YVSKNDENSE VNSNSQRKSD KWWLPTVKVP PTGLSEPAGK WIQFQKDNVN QVLKAAMAIN AQILSEMEIP ENYIESLPKN
301: GRESLGESVY KSITVEYFDP GQFLSTMDMS TEHKVLDLKN RIEASIVIWR RKMTNKDSKS AWSSAVSIEK RELFEERAET ILLMLKHQFP GLPQSSLDIS
401: KIQYNKDVGQ AILESYSRVI ESLAYTVMSR IDDVLYADSV TKNPSLAVSS RRYSLDSVPV AEQTSPNSGD EISNLKFSET PPSMTLSDVM GWSSTNEGSD
501: LKTNSAGDLE EYEKEKYEKV
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
Arabidopsis Description
ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.