Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G24620.1 | Thale cress | nucleus | 81.82 | 80.88 |
| Solyc07g032730.2.1 | Tomato | nucleus | 50.1 | 63.33 |
| VIT_09s0002g04310.t01 | Wine grape | cytosol | 55.32 | 63.0 |
| KRH48369 | Soybean | mitochondrion | 61.12 | 56.23 |
| KRH39304 | Soybean | nucleus | 56.48 | 56.15 |
| PGSC0003DMT400001020 | Potato | nucleus | 59.57 | 55.5 |
| Solyc12g007150.1.1 | Tomato | nucleus | 59.38 | 55.32 |
| AT1G79860.1 | Thale cress | nucleus | 54.93 | 55.15 |
| AT5G19560.4 | Thale cress | mitochondrion | 54.55 | 55.08 |
| PGSC0003DMT400040374 | Potato | nucleus | 48.94 | 53.83 |
| AT1G52240.1 | Thale cress | nucleus | 52.8 | 50.28 |
| AT3G16130.1 | Thale cress | nucleus | 47.0 | 45.17 |
| AT4G00460.2 | Thale cress | nucleus | 35.98 | 39.32 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 34.24 | 38.23 |
| AT4G38430.1 | Thale cress | nucleus | 40.43 | 38.14 |
| AT5G02010.1 | Thale cress | nucleus | 37.33 | 35.35 |
| AT1G01700.4 | Thale cress | nucleus | 34.62 | 34.76 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 37.33 | 33.33 |
| AT5G05940.1 | Thale cress | cytosol | 38.68 | 32.73 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 33.46 | 30.03 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:826941 | ProteinID:AEE83250.1 | ArrayExpress:AT4G13240 | EnsemblPlantsGene:AT4G13240 |
| RefSeq:AT4G13240 | TAIR:AT4G13240 | RefSeq:AT4G13240-TAIR-G | EnsemblPlants:AT4G13240.1 | TAIR:AT4G13240.1 | Symbol:ATROPGEF9 |
| ProteinID:CAB41934.1 | ProteinID:CAB78366.1 | EMBL:DQ446830 | EMBL:DQ653196 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0065009 | GO:GO:0080092 |
| InterPro:IPR005512 | RefSeq:NP_193060.1 | PFAM:PF03759 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 |
| UniProt:Q9SVQ3 | InterPro:RopGEF | UniParc:UPI00000A04F2 | : | : | : |
Description
ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
Coordinates
chr4:+:7679950..7682622
Molecular Weight (calculated)
58175.9 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.652
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.