Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62299 | Canola | cytosol, nucleus, plastid | 85.76 | 88.21 |
| CDY12303 | Canola | nucleus | 85.07 | 87.03 |
| CDY12411 | Canola | cytosol | 16.15 | 72.09 |
| KRH76428 | Soybean | mitochondrion, nucleus | 60.76 | 62.17 |
| KRH39757 | Soybean | mitochondrion, nucleus | 60.24 | 61.63 |
| KRH07751 | Soybean | cytosol, nucleus, plastid | 58.51 | 60.72 |
| Solyc08g075120.2.1 | Tomato | extracellular | 58.16 | 59.5 |
| GSMUA_Achr8P14480_001 | Banana | nucleus | 26.74 | 59.46 |
| PGSC0003DMT400053650 | Potato | cytosol, nucleus, plastid | 57.81 | 59.15 |
| KRH07240 | Soybean | cytosol, nucleus, plastid | 56.77 | 58.81 |
| GSMUA_Achr11P... | Banana | cytosol | 32.81 | 56.59 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 47.74 | 50.64 |
| TraesCS6A01G270900.1 | Wheat | cytosol | 47.57 | 50.46 |
| Os02t0702600-02 | Rice | cytosol | 47.57 | 50.46 |
| KXG30927 | Sorghum | cytosol | 47.22 | 50.37 |
| Zm00001d017755_P002 | Maize | cytosol | 47.22 | 50.28 |
| TraesCS6D01G244200.1 | Wheat | cytosol | 47.4 | 50.28 |
| Zm00001d051553_P004 | Maize | cytosol | 46.53 | 49.63 |
| PGSC0003DMT400075550 | Potato | extracellular | 16.15 | 45.15 |
| GSMUA_Achr8P14490_001 | Banana | cytosol | 14.93 | 44.79 |
| HORVU6Hr1G068660.4 | Barley | nucleus | 43.92 | 41.82 |
| GSMUA_Achr11P... | Banana | cytosol | 12.33 | 39.01 |
| VIT_02s0087g00460.t01 | Wine grape | mitochondrion, nucleus | 61.46 | 38.82 |
| Solyc12g096220.1.1 | Tomato | nucleus | 48.09 | 38.05 |
| AT4G00460.2 | Thale cress | nucleus | 28.47 | 34.67 |
| HORVU6Hr1G041610.18 | Barley | plastid | 43.92 | 33.73 |
| AT4G13240.1 | Thale cress | nucleus | 30.03 | 33.46 |
| AT1G79860.1 | Thale cress | nucleus | 29.69 | 33.2 |
| AT3G24620.1 | Thale cress | nucleus | 30.03 | 33.08 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 26.39 | 32.83 |
| AT5G19560.4 | Thale cress | mitochondrion | 29.17 | 32.81 |
| AT1G01700.4 | Thale cress | nucleus | 28.99 | 32.43 |
| AT4G38430.1 | Thale cress | nucleus | 29.69 | 31.2 |
| AT3G16130.1 | Thale cress | nucleus | 28.99 | 31.04 |
| AT5G02010.1 | Thale cress | nucleus | 29.17 | 30.77 |
| AT1G52240.1 | Thale cress | nucleus | 28.47 | 30.2 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 28.47 | 28.32 |
| AT5G05940.1 | Thale cress | cytosol | 28.3 | 26.68 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:840052 | ProteinID:AAG60161.1 | ProteinID:AEE31380.1 | EMBL:AK118553 |
| EMBL:AK222010 | ArrayExpress:AT1G31650 | EnsemblPlantsGene:AT1G31650 | RefSeq:AT1G31650 | TAIR:AT1G31650 | RefSeq:AT1G31650-TAIR-G |
| EnsemblPlants:AT1G31650.1 | TAIR:AT1G31650.1 | Symbol:ATROPGEF14 | Unigene:At.40302 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0065009 | GO:GO:0080092 |
| InterPro:IPR005512 | RefSeq:NP_001320846.1 | RefSeq:NP_174446.2 | PFAM:PF03759 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | InterPro:PRONE_dom |
| PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF2 | UniProt:Q56WM6 | InterPro:RopGEF | UniParc:UPI0000196F70 |
| SEG:seg | : | : | : | : | : |
Description
ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
Coordinates
chr1:-:11326257..11330791
Molecular Weight (calculated)
64437.3 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.572
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.