Factsheet for TraesCS6B01G298000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G270900.1	Wheat	cytosol	98.89	98.89
TraesCS6D01G244200.1	Wheat	cytosol	98.71	98.71
Os02t0702600-02	Rice	cytosol	87.29	87.29
KXG30927	Sorghum	cytosol	86.0	86.48
Zm00001d017755_P002	Maize	cytosol	84.53	84.84
Zm00001d051553_P004	Maize	cytosol	83.24	83.7
HORVU6Hr1G068660.4	Barley	nucleus	84.16	75.54
GSMUA_Achr11P...	Banana	cytosol	41.07	66.77
GSMUA_Achr8P14480_001	Banana	nucleus	31.12	65.25
HORVU6Hr1G041610.18	Barley	plastid	84.16	60.93
CDY69871	Canola	cytosol	11.6	56.25
GSMUA_Achr8P14490_001	Banana	cytosol	19.15	54.17
GSMUA_Achr11P...	Banana	cytosol	17.5	52.2
KRH07751	Soybean	cytosol, nucleus, plastid	51.75	50.63
KRH07240	Soybean	cytosol, nucleus, plastid	51.38	50.18
CDX84189	Canola	cytosol	44.2	48.88
KRH39757	Soybean	mitochondrion, nucleus	50.64	48.85
CDY12411	Canola	cytosol	11.6	48.84
KRH76428	Soybean	mitochondrion, nucleus	50.46	48.67
CDY31706	Canola	cytosol	44.38	47.91
AT1G31650.1	Thale cress	mitochondrion, nucleus	50.64	47.74
Bra005323.1-P	Field mustard	nucleus	44.01	47.7
Solyc08g075120.2.1	Tomato	extracellular	49.36	47.6
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	48.99	47.25
CDY12303	Canola	nucleus	48.8	47.07
CDY62299	Canola	cytosol, nucleus, plastid	48.43	46.96
Bra005322.1-P	Field mustard	nucleus	32.23	44.64
PGSC0003DMT400075550	Potato	extracellular	15.84	41.75
TraesCS5B01G339200.1	Wheat	cytosol	31.86	35.82
TraesCS3B01G396500.1	Wheat	cytosol	33.52	33.77
TraesCS1B01G222700.1	Wheat	plastid	29.65	33.68
Solyc12g096220.1.1	Tomato	nucleus	44.75	33.38
TraesCS2B01G426300.1	Wheat	cytosol	27.99	32.69
TraesCS3B01G331000.1	Wheat	nucleus	27.99	32.69
TraesCS6B01G449200.1	Wheat	nucleus	27.44	31.63
TraesCS1B01G289900.1	Wheat	cytosol	32.97	31.63
TraesCS3B01G304200.1	Wheat	plastid	29.65	31.2
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	50.83	30.26
TraesCS1B01G420200.1	Wheat	nucleus, plastid	29.65	28.5

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0080092	InterPro:IPR005512	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF	EnsemblPlantsGene:TraesCS6B01G298000
EnsemblPlants:TraesCS6B01G298000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:534921274..534925390

Molecular Weight (calculated)

60652.8 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.280

Length

543 amino acids

Sequence
(BLAST)

001: MRMKTLACCR RRPQDFSVDM DQEPEKVTTY NGLESCIFNS SSYDEDSGVS ATTGADGCVT ADSLEDEASS CSSSKDVDGS SFSSQCLPLS KQEEHSLYEL
101: DTLDAIHLLP VKGKNPITYT LSAADIETMK EKFAKLLLGD DVSGGARGVC AALALSNGIT NLSATIFGEL WKLEPLCEEK KIRWRKEMDW LLSPTTYMVE
201: LVPTKQNGAD GCMFEIMTPK ARSDVHVNLP ALQKLDSMLI EVLDSMVDTE YWYVESGSRS GGRGKNNGER QTKKWWLPSP CVPEQGLSQS QRKRIVFQAK
301: LVHQILKAAK SINEQVLFQI PIPMAVMDAL PKSGRSSLGE DLYHAITTDY IPIEEIFVSL SLKTEHSVLE TMNRLEGALF AWNQRISEER SRKSPARHSW
401: KFMKDSSSEL EKMSACIERV ETLIQLLKSR FPNLPPTFID VVKVQYNEDV GHAIVEAYSR VLVGVAFSIL SRVAEIMLED DLVKKPNTPM ATLKFDLSSD
501: VYLAGITETP PGHIRRSLMD QISMVDGRFD AVVKKRGAKQ LMW

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.