Factsheet for PGSC0003DMT400053650

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075120.2.1	Tomato	extracellular	98.22	98.22
CDY69871	Canola	cytosol	14.03	70.54
KRH39757	Soybean	mitochondrion, nucleus	64.48	64.48
KRH76428	Soybean	mitochondrion, nucleus	64.12	64.12
KRH07751	Soybean	cytosol, nucleus, plastid	61.99	62.88
KRH07240	Soybean	cytosol, nucleus, plastid	61.1	61.87
CDY12411	Canola	cytosol	14.03	61.24
PGSC0003DMT400075550	Potato	extracellular	22.38	61.16
CDX84189	Canola	cytosol	51.33	58.86
CDY31706	Canola	cytosol	52.58	58.85
Bra005323.1-P	Field mustard	nucleus	52.04	58.48
CDY12303	Canola	nucleus	58.26	58.26
CDY62299	Canola	cytosol, nucleus, plastid	57.55	57.86
AT1G31650.1	Thale cress	mitochondrion, nucleus	59.15	57.81
GSMUA_Achr8P14480_001	Banana	nucleus	25.75	55.98
GSMUA_Achr11P...	Banana	cytosol	33.04	55.69
Bra005322.1-P	Field mustard	nucleus	38.01	54.59
KXG30927	Sorghum	cytosol	48.31	50.37
Zm00001d017755_P002	Maize	cytosol	47.78	49.72
Os02t0702600-02	Rice	cytosol	47.6	49.36
Zm00001d051553_P004	Maize	cytosol	47.07	49.07
TraesCS6B01G298000.1	Wheat	cytosol	47.25	48.99
TraesCS6A01G270900.1	Wheat	cytosol	46.89	48.62
TraesCS6D01G244200.1	Wheat	cytosol	46.71	48.43
GSMUA_Achr8P14490_001	Banana	cytosol	15.81	46.35
GSMUA_Achr11P...	Banana	cytosol	14.92	46.15
HORVU6Hr1G068660.4	Barley	nucleus	43.16	40.17
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	63.94	39.47
PGSC0003DMT400000136	Potato	nucleus	31.79	37.53
PGSC0003DMT400042632	Potato	nucleus	31.08	37.39
PGSC0003DMT400067654	Potato	nucleus	33.93	35.9
PGSC0003DMT400006531	Potato	cytosol	31.97	35.86
PGSC0003DMT400025800	Potato	nucleus	33.39	34.24
PGSC0003DMT400040374	Potato	nucleus	27.89	33.4
PGSC0003DMT400047997	Potato	nucleus	33.93	33.1
HORVU6Hr1G041610.18	Barley	plastid	43.16	32.4
PGSC0003DMT400001020	Potato	nucleus	31.62	32.07
PGSC0003DMT400097197	Potato	nucleus	31.62	31.62
PGSC0003DMT400005554	Potato	cytosol, plastid	33.75	28.83
PGSC0003DMT400049230	Potato	nucleus	34.46	28.03

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102602322	MapMan:19.4.2.2	MapMan:27.4.3.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:M1BV96	PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400020811	PGSC:PGSC0003DMG400020811	EnsemblPlants:PGSC0003DMT400053650
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI00029661F4
RefSeq:XP_006359943.1	SEG:seg	:	:	:	:

Description

Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020811]

Coordinates

chr8:-:46805382..46812355

Molecular Weight (calculated)

62615.2 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.431

Length

563 amino acids

Sequence
(BLAST)

001: MVIMRSRLAC CTRDREISID FDENQRITTY DGLESILNSR PYDNQSVTSR GDGGVTDSLD DDDSSSSSSN NVFGSFSSHW TTMKRDDQGS EEWDFSASPK
101: HYYVKEKPAY TTQFSDLETM KEKFAKLLLG EDVTGGSKGV STALALSNAI TNLAASVFGE LWKLEPLAED GRRKWKREME WLLSPTNHMI ELVPAKQTGS
201: NGQKLEIMVP KARADIHMNL PALQKLDSML LEALDSMVNT EFWYTEVGSR AEGRSRSAGE SKRWWLPSPQ VPIAGLSDPE RNKLLNQGKL VNQIYKAAKA
301: INENVLSEMP VPTIIKEALP KSGRTSLGED LYRILNAEST SVEDMLNFLN VRSEHNALEA VNRLEAAILA WKEKVADHVC GKSPARTSWS FKKDPISELD
401: KIEVLSSRAE ALLQQLMNKY PNLPRTFLNV TKIQYGKDIG CSILEAYSRV LLNLAFSILT RIGEILQEDI LSNPNSPAAS CHLPGIRIAG LTDSPMASRV
501: RHSLIDQMNK TDGRCCDSRR TNASDIDIEF AESRLSSVTA TPSRRVWCIG REACSSMSAA NSP

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.