Factsheet for PGSC0003DMT400000136

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094610.2.1	Tomato	nucleus	98.74	98.74
KRH65102	Soybean	nucleus	69.81	69.23
KRH48179	Soybean	nucleus	53.67	68.27
KRH15734	Soybean	cytosol	35.85	65.77
AT4G00460.2	Thale cress	nucleus	64.15	64.69
Bra000971.1-P	Field mustard	nucleus	62.89	62.76
CDY70620	Canola	nucleus	61.64	62.69
CDY07216	Canola	cytosol	62.26	62.53
Bra037342.1-P	Field mustard	cytosol	62.05	62.05
CDY51157	Canola	nucleus	58.7	61.54
VIT_15s0046g02530.t01	Wine grape	plastid	64.57	61.11
KRH00737	Soybean	nucleus, plastid	64.57	60.16
AT1G01700.4	Thale cress	nucleus	64.36	59.61
KRH40457	Soybean	cytosol	63.73	59.38
KRG94270	Soybean	mitochondrion	13.42	57.66
Os10t0550300-00	Rice	plastid	57.44	57.2
GSMUA_Achr5P20570_001	Banana	nucleus	57.44	56.85
TraesCS1B01G222700.1	Wheat	plastid	54.93	54.81
EES11256	Sorghum	nucleus	54.09	54.78
Zm00001d002696_P001	Maize	cytosol	53.04	54.76
TraesCS1D01G211900.1	Wheat	nucleus	54.72	54.72
TraesCS1A01G208700.1	Wheat	nucleus	54.3	54.3
TraesCS2B01G426300.1	Wheat	cytosol	52.83	54.19
EER91970	Sorghum	plastid	55.56	54.19
HORVU1Hr1G053350.4	Barley	nucleus, plastid	54.09	53.97
TraesCS2A01G408100.1	Wheat	cytosol	52.62	53.63
TraesCS2D01G405400.1	Wheat	nucleus	52.83	53.62
Zm00001d029850_P001	Maize	nucleus, plastid	54.3	52.97
Zm00001d021489_P001	Maize	nucleus, plastid	50.1	51.51
HORVU6Hr1G092860.2	Barley	nucleus	49.27	51.42
EER99384	Sorghum	nucleus, plastid	49.9	51.4
TraesCS6A01G405000.1	Wheat	nucleus	48.64	50.77
Os07t0481100-01	Rice	cytosol	48.85	50.65
TraesCS6D01G388300.1	Wheat	nucleus	49.48	50.54
Os04t0559100-00	Rice	cytosol	19.08	50.0
TraesCS6B01G449200.1	Wheat	nucleus	49.27	49.89
HORVU2Hr1G096430.13	Barley	mitochondrion	52.41	47.08
CDX91908	Canola	cytosol	62.26	45.34
PGSC0003DMT400067654	Potato	nucleus	48.85	43.8
PGSC0003DMT400047997	Potato	nucleus	45.91	37.95
PGSC0003DMT400025800	Potato	nucleus	43.19	37.52
PGSC0003DMT400042632	Potato	nucleus	36.69	37.39
PGSC0003DMT400040374	Potato	nucleus	36.48	37.02
PGSC0003DMT400005554	Potato	cytosol, plastid	48.85	35.36
PGSC0003DMT400006531	Potato	cytosol	36.9	35.06
PGSC0003DMT400049230	Potato	nucleus	49.48	34.1
PGSC0003DMT400097197	Potato	nucleus	38.99	33.04
PGSC0003DMT400001020	Potato	nucleus	38.36	32.97
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	37.53	31.79
PGSC0003DMT400075550	Potato	extracellular	13.0	30.1

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102594609	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:M0ZG60
PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400000040	PGSC:PGSC0003DMG400000040	EnsemblPlants:PGSC0003DMT400000136	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI0002969034	RefSeq:XP_006339569.1	SEG:seg

Description

Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000040]

Coordinates

chr1:+:72149272..72151488

Molecular Weight (calculated)

53784.5 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.515

Length

477 amino acids

Sequence
(BLAST)

001: MDNISSTDES YDVGYGYQPS PSSVDDQSPT ETTGLSTLSG NSFAYCRTNS ETSAFSEHTD ENSWSETGSP LSSRSLKSPT RAVLSRLGMR QHKTIADDPD
101: TVDLELELMK ERFSKLLLGE DMSGGGKGVA TAVTISNSIT NLYASVFGQH QRLEPLHPDK KIMWKREMNC LLSVCDYIVE FVSTSQMLQD GTTIEALTSR
201: PRSDIHINLP ALRKLDTMLL EILDSFEATE FWYAEKGSMS NNSTRAGSFR KIVQVQPQPQ RKEEKWWLPV VCVPSGGITE KERKHLRHKR DCANQIHKAA
301: MAINSSILAE MEIPESYMTS LPKSGKASVG DSMYRHMYSA EKFSPEQLLD SLNISSEHEA LELADKVEAS MYTWRRKSCL PQAKSSWIMV KDLVTDDRTD
401: KNNVLAERAE SLLYCLKQRY PELSQTTLDT SKIHFNRDVG KAILESYSRV LESLAFNVVA WIEDVLFVDK TMKNQEE

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.