Factsheet for PGSC0003DMT400047997

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009227
PGSC0003DMT400013629
PGSC0003DMT400038984
PGSC0003DMT400051660
PGSC0003DMT400058108
PGSC0003DMT400061371
PGSC0003DMT400063227
PGSC0003DMT400063229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	PGSC0003DMT400013629	AT2G30580.1	21798944
AT4G38430.1	PGSC0003DMT400038984	AT2G30580.1	21798944
AT4G38430.1	PGSC0003DMT400051660	AT2G30580.1	21798944
AT4G38430.1	PGSC0003DMT400063227	AT3G48040.1	21798944
AT4G38430.1	PGSC0003DMT400063229	AT3G48040.1	21798944
AT4G38430.1	PGSC0003DMT400009227	AT3G51300.1	21798944
AT4G38430.1	PGSC0003DMT400058108	AT3G51300.1	21798944
AT4G38430.1	PGSC0003DMT400061371	AT3G51300.1	21798944
AT4G38430.1	PGSC0003DMT400063227	AT5G62880.1	22500990
AT4G38430.1	PGSC0003DMT400063229	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111930.2.1	Tomato	nucleus	97.92	97.92
VIT_03s0038g03620.t01	Wine grape	cytosol	81.11	79.73
KRH24128	Soybean	cytosol	74.7	75.88
KRH29101	Soybean	cytosol, plastid	74.18	75.62
AT4G38430.1	Thale cress	nucleus	68.63	72.26
TraesCS5A01G340900.1	Wheat	cytosol	59.79	72.18
TraesCS5B01G339200.1	Wheat	cytosol	60.14	71.84
TraesCS5D01G346100.1	Wheat	cytosol	60.14	71.69
GSMUA_Achr3P14650_001	Banana	nucleus	70.19	71.3
Zm00001d006269_P001	Maize	cytosol	47.14	70.83
GSMUA_Achr1P18140_001	Banana	nucleus	66.72	69.62
CDX77457	Canola	cytosol	65.86	69.47
Bra015010.1-P	Field mustard	cytosol	65.51	69.1
CDX85176	Canola	cytosol	65.51	69.1
EER99291	Sorghum	nucleus, plastid	66.03	68.16
GSMUA_Achr10P...	Banana	cytosol	60.66	67.57
Os09t0544800-01	Rice	nucleus	65.68	67.56
HORVU5Hr1G085510.1	Barley	nucleus, plastid	65.86	67.14
Zm00001d021464_P002	Maize	nucleus, plastid	65.34	65.34
GSMUA_Achr2P03580_001	Banana	nucleus	55.46	63.12
PGSC0003DMT400025800	Potato	nucleus	56.5	59.38
PGSC0003DMT400067654	Potato	nucleus	44.71	48.5
PGSC0003DMT400000136	Potato	nucleus	37.95	45.91
PGSC0003DMT400042632	Potato	nucleus	34.32	42.31
PGSC0003DMT400005554	Potato	cytosol, plastid	48.01	42.03
PGSC0003DMT400006531	Potato	cytosol	35.53	40.84
PGSC0003DMT400049230	Potato	nucleus	48.87	40.75
PGSC0003DMT400040374	Potato	nucleus	31.37	38.51
PGSC0003DMT400001020	Potato	nucleus	36.57	38.02
PGSC0003DMT400097197	Potato	nucleus	36.4	37.3
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	33.1	33.93
PGSC0003DMT400075550	Potato	extracellular	11.09	31.07

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102599896	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:M1BLR7
PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400018648	PGSC:PGSC0003DMG400018648	EnsemblPlants:PGSC0003DMT400047997	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI0002962654	RefSeq:XP_006364517.1	SEG:seg

Description

Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018648]

Coordinates

chr1:+:87994278..87999370

Molecular Weight (calculated)

63478.8 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.358

Length

577 amino acids

Sequence
(BLAST)

001: MGSVSSEEGS DQQSERCGSY SLSADVSESE SSSSSFSCRR YDAEGASSSM ASSPLACRRF TAKSEFPTPM LPPFMFPGIG GKDVVPCNEK SEKRQADLSE
101: IDLMKERFAK LLLGEDMSGG GKGVSTALAI SNAITNLSAT IFGELWRLEP LALQKKAMWC REMEWLLCVS DSIVELVPSI QQFPGGGTYE VMATRPRSDL
201: YLNLPALKKL DAMLISILDG FRDTEFWYVD RGIVLAEGDD CDSYPPGIGF GRPSVRQEEK WWLPCPKVPP KGLSEEARKR VQQCRDCTNQ ILKAALAINS
301: NVLAEMETPS AYIETLPKSG KTCLGDIIYR YITADNFSPE CLLDCLDLSS EHHTLEVANR IEAAVHVWRL KDQKKHPHKR KSKGKSWGGK VKGLVADGGK
401: NQYLAERAET LLHSLRLRFP GLPQTALDMN KIQYNKDVGQ SILESYSRVM ESLAFNIMAR IDDVLFVDDA TKRCAAAENI SLFNRGGLDG LPVQKRMSPS
501: PFSIQHSPFT SPFATPTFCL SPLIGSPGKT ASPSKAGSKV LPTAKLEKVT PTDLDKLWSY AGNLSARRPS KDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.