Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G340900.1 | Wheat | cytosol | 87.24 | 70.08 |
TraesCS5B01G339200.1 | Wheat | cytosol | 87.5 | 69.57 |
TraesCS5D01G346100.1 | Wheat | cytosol | 87.24 | 69.21 |
EER99291 | Sorghum | nucleus, plastid | 95.83 | 65.83 |
Os09t0544800-01 | Rice | nucleus | 92.19 | 63.1 |
Zm00001d021464_P002 | Maize | nucleus, plastid | 94.01 | 62.56 |
HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 86.72 | 58.83 |
GSMUA_Achr3P14650_001 | Banana | nucleus | 75.78 | 51.23 |
GSMUA_Achr1P18140_001 | Banana | nucleus | 70.83 | 49.19 |
VIT_03s0038g03620.t01 | Wine grape | cytosol | 74.48 | 48.72 |
PGSC0003DMT400047997 | Potato | nucleus | 70.83 | 47.14 |
Solyc01g111930.2.1 | Tomato | nucleus | 70.83 | 47.14 |
GSMUA_Achr10P... | Banana | cytosol | 63.54 | 47.1 |
KRH24128 | Soybean | cytosol | 68.75 | 46.48 |
KRH29101 | Soybean | cytosol, plastid | 68.23 | 46.29 |
AT4G38430.1 | Thale cress | nucleus | 63.28 | 44.34 |
Bra015010.1-P | Field mustard | cytosol | 62.76 | 44.06 |
CDX77457 | Canola | cytosol | 62.76 | 44.06 |
CDX85176 | Canola | cytosol | 62.5 | 43.88 |
GSMUA_Achr2P03580_001 | Banana | nucleus | 57.55 | 43.59 |
VIT_18s0001g00550.t01 | Wine grape | cytosol | 56.25 | 40.6 |
Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 29.17 | 39.02 |
PGSC0003DMT400025800 | Potato | nucleus | 51.3 | 35.88 |
Solyc04g082110.2.1 | Tomato | nucleus | 40.62 | 34.59 |
Zm00001d047899_P001 | Maize | cytosol | 24.74 | 34.17 |
Zm00001d042861_P001 | Maize | cytosol | 47.66 | 31.94 |
Zm00001d010062_P001 | Maize | peroxisome | 47.92 | 31.89 |
Zm00001d002696_P001 | Maize | cytosol | 38.28 | 31.82 |
Zm00001d021489_P001 | Maize | nucleus, plastid | 37.24 | 30.82 |
Zm00001d029850_P001 | Maize | nucleus, plastid | 38.54 | 30.27 |
Zm00001d053307_P002 | Maize | cytosol, plastid | 36.2 | 28.78 |
Zm00001d016001_P002 | Maize | mitochondrion | 36.72 | 26.4 |
Zm00001d038989_P002 | Maize | nucleus, plastid | 34.9 | 26.27 |
Zm00001d043383_P001 | Maize | nucleus | 34.64 | 25.43 |
Zm00001d023356_P001 | Maize | cytosol | 23.18 | 25.07 |
Zm00001d037119_P001 | Maize | plastid | 27.86 | 24.83 |
Zm00001d009549_P002 | Maize | mitochondrion | 35.68 | 24.82 |
Zm00001d049679_P001 | Maize | plastid | 27.08 | 23.53 |
Zm00001d051553_P004 | Maize | cytosol | 31.51 | 22.41 |
Zm00001d017755_P002 | Maize | cytosol | 31.25 | 22.18 |
Zm00001d043889_P001 | Maize | mitochondrion | 34.9 | 22.15 |
Protein Annotations
Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | UniProt:A0A1D6EU95 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005085 |
GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | GO:GO:0065009 | InterPro:IPR005512 | ProteinID:ONM23241.1 |
PFAM:PF03759 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF6 | InterPro:RopGEF |
UniParc:UPI000843E444 | EnsemblPlantsGene:Zm00001d006269 | EnsemblPlants:Zm00001d006269_P001 | EnsemblPlants:Zm00001d006269_T001 | SEG:seg | : |
Description
Pollen-specific kinase partner protein
Coordinates
chr2:-:203287605..203291066
Molecular Weight (calculated)
42500.8 Da
IEP (calculated)
7.970
GRAVY (calculated)
-0.422
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPRPRSDLY MNLPALKKLD AMLLAMIDGF KDTEFWYVDR GVMVEDSGGP FPSSSSSSCG RPSVRQEDKW WLPCPRVPPK GLSEDARRKL QQSRDCANQI
101: LKAAMAINSD VLAEMEIPEV YLETLPKNGK SCLGEIIYRY ITAEQFSPEC LLDCLDLSSE HHTLEVANRI EGAIHVWKLK GQKKSTPQAK SKISWGGKVK
201: GLVGDKEKSH TLSERADGLL QSLRLRYPGL PQTSLDMNKI QYNKDVGQSI LECYSRVLES LAFNIIARID DVIYVDDATN RSAAAESVSI FNRGTGVPVQ
301: KRISPSPFSI QNSPYGSPFA TPTFCSSTPV TGSPGRVQPP LNKNILGTQE IKVEKLFSGD LEKVWTYAGN LSARKDAGDA PERD
101: LKAAMAINSD VLAEMEIPEV YLETLPKNGK SCLGEIIYRY ITAEQFSPEC LLDCLDLSSE HHTLEVANRI EGAIHVWKLK GQKKSTPQAK SKISWGGKVK
201: GLVGDKEKSH TLSERADGLL QSLRLRYPGL PQTSLDMNKI QYNKDVGQSI LECYSRVLES LAFNIIARID DVIYVDDATN RSAAAESVSI FNRGTGVPVQ
301: KRISPSPFSI QNSPYGSPFA TPTFCSSTPV TGSPGRVQPP LNKNILGTQE IKVEKLFSGD LEKVWTYAGN LSARKDAGDA PERD
001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
Arabidopsis Description
ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.