Factsheet for Solyc04g082110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025800	Potato	nucleus	96.01	78.87
VIT_18s0001g00550.t01	Wine grape	cytosol	64.3	54.51
GSMUA_Achr2P03580_001	Banana	nucleus	56.1	49.9
Solyc01g111930.2.1	Tomato	nucleus	62.97	49.22
TraesCS5A01G340900.1	Wheat	cytosol	51.22	48.33
GSMUA_Achr10P...	Banana	cytosol	55.43	48.26
TraesCS5B01G339200.1	Wheat	cytosol	51.44	48.03
TraesCS5D01G346100.1	Wheat	cytosol	51.22	47.73
GSMUA_Achr3P14650_001	Banana	nucleus	59.87	47.54
GSMUA_Achr1P18140_001	Banana	nucleus	57.65	47.02
Os09t0544800-01	Rice	nucleus	58.31	46.88
EER99291	Sorghum	nucleus, plastid	57.43	46.33
HORVU5Hr1G085510.1	Barley	nucleus, plastid	57.65	45.94
Zm00001d021464_P002	Maize	nucleus, plastid	57.43	44.89
Zm00001d006269_P001	Maize	cytosol	34.59	40.62
Solyc08g006550.2.1	Tomato	nucleus	44.79	38.11
Solyc01g094610.2.1	Tomato	nucleus	40.13	37.95
Solyc07g032730.2.1	Tomato	nucleus	34.15	37.65
Solyc09g011480.2.1	Tomato	nucleus	47.89	36.73
Solyc06g066650.2.1	Tomato	nucleus	37.92	36.46
Solyc03g120650.2.1	Tomato	cytosol	37.69	33.86
Solyc12g044270.1.1	Tomato	nucleus	38.36	32.95
Solyc10g086660.1.1	Tomato	nucleus	48.56	32.25
Solyc12g007150.1.1	Tomato	nucleus	39.25	31.89
Solyc08g075120.2.1	Tomato	extracellular	38.14	30.55
Solyc12g096220.1.1	Tomato	nucleus	35.7	22.12

Protein Annotations

EnsemblPlants:Solyc04g082110.2.1	EnsemblPlantsGene:Solyc04g082110.2	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	ncoils:Coil	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI0002766485	UniProt:K4BVT8	MapMan:27.4.3.1	:

Description

No Description!

Coordinates

chr4:-:65895378..65898592

Molecular Weight (calculated)

50450.0 Da

IEP (calculated)

4.928

GRAVY (calculated)

-0.342

Length

451 amino acids

Sequence
(BLAST)

001: MESAPSTDDE FDLQSERFDD SYSLSADISE SETCSSTSTF SCRQQDAFTS LSSSSTLHFN SNSGFAELPT VMLPVVGGRH VIMPGEKPDK PEIELSEVEL
101: MKERFAKLLL GEDMSGGGKG VCTAFAISNA ITNLAATVFG ELWKLESLAP QKKSMWFREM DWLLSVSDSI VELVPSEQEF PGGGTFEVMV TQPRSDLYVN
201: LPALKKLDAM LIGMLDAFSG CEFHYVDRGI LVADGEDVEA YPCSPSSHRP SSRLEEKWWL PFPKVPPKGL SEETRKRLRQ CRECTNQIFK AAQAINASTL
301: SEMEVPKDYL EGLPKSGKAS LGEILHRYIT ADHFSPECLF DYLDLSSEYT TLEIANRIEA AMHVWKQKCE KKNLNRSKSG KSSWGGTVKG LVGLVERYQL
401: LSQRAENLLR NLKLNFPGLP QTALDMTKIQ YNKDIQSLRA TLECWRVWPL T

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.