CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES05544
KXG37592
KXG37982
OQU79520

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	KXG37592	AT2G30580.1	21798944
AT4G38430.1	KXG37982	AT2G30580.1	21798944
AT4G38430.1	OQU79520	AT2G30580.1	21798944
AT4G38430.1	EER88130	AT3G48040.1	21798944
AT4G38430.1	EES05544	AT3G48040.1	21798944
AT4G38430.1	EER88130	AT5G62880.1	22500990
AT4G38430.1	EES05544	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006269_P001	Maize	cytosol	65.83	95.83
Zm00001d021464_P002	Maize	nucleus, plastid	95.35	92.37
Os09t0544800-01	Rice	nucleus	90.34	90.02
TraesCS5A01G340900.1	Wheat	cytosol	76.21	89.12
TraesCS5B01G339200.1	Wheat	cytosol	76.39	88.41
TraesCS5D01G346100.1	Wheat	cytosol	76.39	88.22
HORVU5Hr1G085510.1	Barley	nucleus, plastid	86.94	85.87
GSMUA_Achr3P14650_001	Banana	nucleus	73.17	72.01
GSMUA_Achr1P18140_001	Banana	nucleus	70.13	70.89
GSMUA_Achr10P...	Banana	cytosol	64.4	69.5
VIT_03s0038g03620.t01	Wine grape	cytosol	70.48	67.12
Solyc01g111930.2.1	Tomato	nucleus	68.16	66.03
PGSC0003DMT400047997	Potato	nucleus	68.16	66.03
KRH29101	Soybean	cytosol, plastid	65.65	64.84
KRH24128	Soybean	cytosol	65.47	64.44
GSMUA_Achr2P03580_001	Banana	nucleus	57.6	63.51
Bra015010.1-P	Field mustard	cytosol	62.08	63.44
CDX77457	Canola	cytosol	62.08	63.44
CDX85176	Canola	cytosol	61.9	63.25
AT4G38430.1	Thale cress	nucleus	61.9	63.14
VIT_18s0001g00550.t01	Wine grape	cytosol	57.25	60.15
Solyc04g082110.2.1	Tomato	nucleus	46.33	57.43
PGSC0003DMT400025800	Potato	nucleus	53.31	54.28
EES11256	Sorghum	nucleus	40.43	47.98
EES03886	Sorghum	cytosol	45.62	46.79
EER91970	Sorghum	plastid	39.71	45.4
EER99384	Sorghum	nucleus, plastid	37.39	45.14
EES18335	Sorghum	cytosol	47.23	45.05
OQU84790	Sorghum	cytosol	34.35	43.64
OQU87589	Sorghum	nucleus	36.14	39.07
KXG33101	Sorghum	mitochondrion	37.21	37.21
EES19937	Sorghum	mitochondrion	35.96	36.55
KXG30927	Sorghum	cytosol	33.45	34.63

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8063340	UniProt:C5X701	EnsemblPlants:EER99291	ProteinID:EER99291
ProteinID:EER99291.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0016324	GO:GO:0030154	GO:GO:0040007	GO:GO:0065009	GO:GO:0080092
GO:GO:2000012	GO:GO:2001108	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3002G284100	UniParc:UPI0001A83E06	RefSeq:XP_002462770.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:66489622..66493393

Molecular Weight (calculated)

60760.9 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.349

Length

559 amino acids

Sequence
(BLAST)

001: MASASEDEAA SDRCSGSYSP SADVSESETS SDCSAPTTRR FASSSSASAT VSRLASSSSS LPTPASATAF YLSSKPVSDL SEIDMMKERF AKLLLGEDMS
101: GSGKGVCTAL AISNAITNLS ATVFGELWRL EPLATARKAM WTREMEWLLS VADSIVELTP SIQELPEGGG QFEVMVPRPR SDLYMNLPAL KKLDAMLLAM
201: IDGFKGTEFW YVDRGVMVED SGGPFPSSSS SSSCGRPSVR QEEKWWLPCP RVPPKGLSED ARRKLQQSRD CANQILKAAM AINSDVLAEM EIPDVYLETL
301: PKSGKSCLGE IIYRYITAEQ FSPECLLDCL DLSSEHHTLE VANRIEAAIH VWKLKGQKKS TPQTKSKKSW GGKVKGLVGD KEKSHTLSER ADGLLQSLRL
401: RYPGLPQTSL DMNKIQYNKD VGQSILESYS RVLESLAFNI IARIDDVIYV DDATKKSAAA ESVSIFNRGT GVPVQKRISP SPFSIQNTPY ASPFATPTFC
501: SSTPVTGSPG RGQPPLHKNN LGTQEIKVEK LFAGDLEKVW TYAGNLSARK DAGDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.