Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015010.1-P | Field mustard | cytosol | 99.45 | 99.45 |
| CDX85176 | Canola | cytosol | 98.9 | 98.9 |
| AT4G38430.1 | Thale cress | nucleus | 86.47 | 86.31 |
| KRH29101 | Soybean | cytosol, plastid | 69.29 | 66.96 |
| KRH24128 | Soybean | cytosol | 68.92 | 66.37 |
| PGSC0003DMT400047997 | Potato | nucleus | 69.47 | 65.86 |
| VIT_03s0038g03620.t01 | Wine grape | cytosol | 70.57 | 65.76 |
| Solyc01g111930.2.1 | Tomato | nucleus | 69.1 | 65.51 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 57.04 | 65.27 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 57.4 | 64.88 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 57.22 | 64.8 |
| GSMUA_Achr3P14650_001 | Banana | nucleus | 66.18 | 63.73 |
| Zm00001d006269_P001 | Maize | cytosol | 44.06 | 62.76 |
| EER99291 | Sorghum | nucleus, plastid | 63.44 | 62.08 |
| GSMUA_Achr10P... | Banana | cytosol | 58.68 | 61.97 |
| GSMUA_Achr1P18140_001 | Banana | nucleus | 62.52 | 61.84 |
| Os09t0544800-01 | Rice | nucleus | 63.07 | 61.5 |
| HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 63.62 | 61.48 |
| Zm00001d021464_P002 | Maize | nucleus, plastid | 62.71 | 59.45 |
| GSMUA_Achr2P03580_001 | Banana | nucleus | 53.56 | 57.79 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.13 | 52.0 |
| CDX74772 | Canola | nucleus, plastid | 38.76 | 47.11 |
| CDY18892 | Canola | nucleus | 38.39 | 46.46 |
| CDY07216 | Canola | cytosol | 40.04 | 46.11 |
| CDY70620 | Canola | nucleus | 39.49 | 46.06 |
| CDY10476 | Canola | nucleus | 46.98 | 45.89 |
| CDY40325 | Canola | nucleus | 46.8 | 45.71 |
| CDY51157 | Canola | nucleus | 38.03 | 45.71 |
| CDY69871 | Canola | cytosol | 9.32 | 45.54 |
| CDY41197 | Canola | cytosol, plastid | 42.05 | 41.52 |
| CDY40246 | Canola | cytosol, plastid | 42.05 | 41.29 |
| CDX70109 | Canola | cytosol | 45.7 | 39.49 |
| CDX67930 | Canola | nucleus | 35.1 | 39.43 |
| CDY45633 | Canola | nucleus | 37.48 | 39.2 |
| CDY03297 | Canola | mitochondrion | 37.48 | 39.2 |
| CDX98888 | Canola | cytosol | 45.7 | 39.19 |
| CDY39783 | Canola | mitochondrion | 37.48 | 39.05 |
| CDY46477 | Canola | nucleus | 37.11 | 38.96 |
| CDX77402 | Canola | nucleus | 36.93 | 38.77 |
| CDY03296 | Canola | nucleus | 23.03 | 38.07 |
| CDY42277 | Canola | nucleus | 34.37 | 38.06 |
| CDY44926 | Canola | nucleus | 34.37 | 38.06 |
| CDX92519 | Canola | plastid | 34.55 | 38.03 |
| CDX88884 | Canola | cytosol, plastid | 33.64 | 37.7 |
| CDX87879 | Canola | nucleus | 37.66 | 36.98 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.2 | 36.87 |
| CDX70882 | Canola | cytosol | 33.64 | 36.44 |
| CDY58963 | Canola | cytosol | 24.68 | 36.29 |
| CDX97723 | Canola | nucleus | 35.28 | 36.28 |
| CDY30136 | Canola | nucleus | 36.2 | 36.0 |
| CDY12411 | Canola | cytosol | 8.41 | 35.66 |
| CDY52982 | Canola | nucleus | 37.66 | 34.28 |
| CDY67259 | Canola | nucleus | 37.29 | 33.94 |
| CDX84189 | Canola | cytosol | 30.16 | 33.6 |
| CDY31706 | Canola | cytosol | 30.53 | 33.2 |
| CDX91908 | Canola | cytosol | 39.49 | 32.98 |
| CDY28381 | Canola | nucleus | 34.92 | 31.89 |
| CDY20181 | Canola | nucleus | 35.1 | 31.63 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 30.35 | 29.64 |
| CDY12303 | Canola | nucleus | 30.16 | 29.31 |
| CDX93028 | Canola | nucleus | 23.22 | 26.79 |
Protein Annotations
| EnsemblPlants:CDX77457 | EnsemblPlantsGene:GSBRNA2T00128320001 | Gene3D:1.20.58.2010 | GO:A0A078CL50 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF6 | PFAM:PF03759 | PFscan:PS51334 | ProteinID:CDX77457 | ProteinID:CDX77457.1 | SEG:seg |
| UniParc:UPI0004EDD494 | MapMan:27.4.3.1 | : | : | : | : |
Description
BnaA07g05950D
Coordinates
chrLK031811:-:794223..796479
Molecular Weight (calculated)
60491.8 Da
IEP (calculated)
5.887
GRAVY (calculated)
-0.446
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLSSEEDE ECSSERCGSY SPSADVSCQS ESSSSFFGEA SSPRRFYFPA PVMLPVIGGK DVVWDDKSEK QGSDLSEIEM MKERFAKLLL GEDMSGGGKG
101: VCTALAISNA ITNLSATVFG ELWRLEPLAP QKKAMWRREL EWLLCVCDSI VELIPSTQQF PGGGGTYEIM ETRPRSDLYA NLPALKKLDA MLIDMLDGFS
201: DTEFWYTDRG IGLGDCEKES YDSPASRGGG CGRPSFRQEE KWWLPCPKVP PNGLSEETRK KLQQCRDFAN QILKAALAIN AGVLAEMEIP DPYLETLPKS
301: GKECLGEIIH QYLTANKFSP ECLLDCIDLS SEHQTLEIAN RIEAAVHVWR QKKKGRKHKN QGKLKLSSWS GKVKGLVNDS ERNEFLAQRA ETLLQSLRIR
401: FPGLPQTTLD MNKIQYNRDV GHGVLESYSR VLESMAFNVT ARIDDVLYVD DAIRRSVSAT ESPALFSIGG LNGRPAAQKP FSAQSSPYGS PFATPSLSIA
501: SRSPRRAPLL YRSGTREKGV LGESEKAWSY AGNLSSRRVT GVTPERD
101: VCTALAISNA ITNLSATVFG ELWRLEPLAP QKKAMWRREL EWLLCVCDSI VELIPSTQQF PGGGGTYEIM ETRPRSDLYA NLPALKKLDA MLIDMLDGFS
201: DTEFWYTDRG IGLGDCEKES YDSPASRGGG CGRPSFRQEE KWWLPCPKVP PNGLSEETRK KLQQCRDFAN QILKAALAIN AGVLAEMEIP DPYLETLPKS
301: GKECLGEIIH QYLTANKFSP ECLLDCIDLS SEHQTLEIAN RIEAAVHVWR QKKKGRKHKN QGKLKLSSWS GKVKGLVNDS ERNEFLAQRA ETLLQSLRIR
401: FPGLPQTTLD MNKIQYNRDV GHGVLESYSR VLESMAFNVT ARIDDVLYVD DAIRRSVSAT ESPALFSIGG LNGRPAAQKP FSAQSSPYGS PFATPSLSIA
501: SRSPRRAPLL YRSGTREKGV LGESEKAWSY AGNLSSRRVT GVTPERD
001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
Arabidopsis Description
ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.