CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	CDY00332	AT5G62880.1	22500990
AT2G45890.1	CDY30738	AT5G62880.1	22500990
AT2G45890.1	CDY45748	AT5G62880.1	22500990
AT2G45890.1	CDY56740	AT5G62880.1	22500990
AT2G45890.1	CDY68200	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004945.1-P	Field mustard	nucleus, plastid	99.56	97.39
CDY18892	Canola	nucleus	95.78	95.35
AT2G45890.1	Thale cress	nucleus, plastid	92.44	89.85
CDY70620	Canola	nucleus	58.67	56.29
CDY51157	Canola	nucleus	56.89	56.26
CDY07216	Canola	cytosol	59.33	56.21
GSMUA_Achr5P20570_001	Banana	nucleus	55.11	51.45
VIT_15s0046g02530.t01	Wine grape	plastid	56.89	50.79
Os10t0550300-00	Rice	plastid	52.0	48.85
Zm00001d002696_P001	Maize	cytosol	49.11	47.84
Os04t0559100-00	Rice	cytosol	19.33	47.8
EES11256	Sorghum	nucleus	50.0	47.77
TraesCS2B01G426300.1	Wheat	cytosol	49.11	47.53
EER91970	Sorghum	plastid	51.56	47.44
Zm00001d029850_P001	Maize	nucleus, plastid	51.11	47.03
TraesCS2D01G405400.1	Wheat	nucleus	48.89	46.81
TraesCS2A01G408100.1	Wheat	cytosol	48.67	46.79
Os07t0481100-01	Rice	cytosol	47.56	46.52
TraesCS1B01G222700.1	Wheat	plastid	49.33	46.44
TraesCS1D01G211900.1	Wheat	nucleus	49.11	46.33
TraesCS1A01G208700.1	Wheat	nucleus	48.89	46.12
TraesCS6A01G405000.1	Wheat	nucleus	46.67	45.95
HORVU1Hr1G053350.4	Barley	nucleus, plastid	48.44	45.61
HORVU6Hr1G092860.2	Barley	nucleus	46.22	45.51
TraesCS6D01G388300.1	Wheat	nucleus	46.89	45.18
EER99384	Sorghum	nucleus, plastid	46.44	45.14
Zm00001d021489_P001	Maize	nucleus, plastid	46.44	45.04
CDY69871	Canola	cytosol	11.11	44.64
TraesCS6B01G449200.1	Wheat	nucleus	46.22	44.16
CDY57376	Canola	cytosol, extracellular, nucleus	7.33	44.0
HORVU2Hr1G096430.13	Barley	mitochondrion	48.0	40.68
CDX91908	Canola	cytosol	59.11	40.61
CDX77457	Canola	cytosol	47.11	38.76
CDX85176	Canola	cytosol	46.67	38.39
CDY40325	Canola	nucleus	46.0	36.96
CDY10476	Canola	nucleus	45.56	36.61
CDX67930	Canola	nucleus	38.89	35.93
CDY03296	Canola	nucleus	26.0	35.35
CDX77402	Canola	nucleus	40.67	35.12
CDY46477	Canola	nucleus	40.67	35.12
CDY41197	Canola	cytosol, plastid	42.22	34.3
CDY45633	Canola	nucleus	39.78	34.23
CDY03297	Canola	mitochondrion	39.78	34.23
CDY40246	Canola	cytosol, plastid	42.22	34.11
CDY12411	Canola	cytosol	9.78	34.11
CDY39783	Canola	mitochondrion	39.78	34.1
CDX88884	Canola	cytosol, plastid	36.89	34.02
CDY42277	Canola	nucleus	37.11	33.81
CDY44926	Canola	nucleus	37.11	33.81
CDY58963	Canola	cytosol	27.56	33.33
CDX70882	Canola	cytosol	37.33	33.27
CDX92519	Canola	plastid	36.67	33.2
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	39.56	33.15
CDX70109	Canola	cytosol	45.56	32.39
CDX87879	Canola	nucleus	40.0	32.32
CDX98888	Canola	cytosol	45.33	31.97
CDX97723	Canola	nucleus	37.78	31.95
CDY30136	Canola	nucleus	37.78	30.91
CDX84189	Canola	cytosol	31.78	29.12
CDY67259	Canola	nucleus	38.44	28.79
CDY52982	Canola	nucleus	38.22	28.62
CDY31706	Canola	cytosol	31.56	28.23
CDY28381	Canola	nucleus	37.56	28.21
CDY20181	Canola	nucleus	37.33	27.68
CDY62299	Canola	cytosol, nucleus, plastid	34.22	27.5
CDY12303	Canola	nucleus	33.78	27.0
CDX93028	Canola	nucleus	26.22	24.89

Protein Annotations

EnsemblPlants:CDX74772	EnsemblPlantsGene:GSBRNA2T00116742001	Gene3D:1.20.58.2010	GO:A0A078CD29	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF9	PFAM:PF03759	PFscan:PS51334	ProteinID:CDX74772	ProteinID:CDX74772.1	SEG:seg
UniParc:UPI0004EE43B8	MapMan:27.4.3.1	:	:	:	:

Description

BnaA05g05180D

Coordinates

chrLK031802:+:546654..549367

Molecular Weight (calculated)

50743.5 Da

IEP (calculated)

4.670

GRAVY (calculated)

-0.542

Length

450 amino acids

Sequence
(BLAST)

001: MESSPSSDQN DVSASETPTS SVSSPYRRTY SDISGLSHRF DVQSFYNRPS NTNAVVHEED LSEDAVEPKD NVDGDGEDHD RDSDIDSAED AELEMMRERF
101: AKLLLGEDMS GSGKGVCTAV TVSNSITNLY ATVFGQSLRL QPLSTEKKDL WKREMNCFMS ICDYIVEVIP RSLGNNVEIR ETKLRSDILM NLPALRKLDN
201: MLMDILDGFT ENEFWYVERG SSSMNSNNVV VQRKDEKWWL PVPCVPAEGL SENERKNLRH KRDCANQIHK AALAINDSTL NDMDIPDSYL TTLPKSGKAS
301: VGDVIYKQLC TAEKFYPDQL LDILKISSEH EALELADKVE ASLVTWRRKT GGLAHSKSSW DMMKDMGGDA GNDKNHILAA RARSLLFCLK QRFPELSQTS
401: LDICKIQYNR DVGKAVLESY SRVLEGLAYN VVSWIDDVLY VDRTVRNRDD

Best Arabidopsis Sequence Match ( AT2G45890.1 )
(BLAST)

001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD

Arabidopsis Description

ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.