Factsheet for Os10t0550300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0742200-01
Os06t0234200-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Os02t0742200-01	AT5G62880.1	22500990
AT2G45890.1	Os06t0234200-03	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G211900.1	Wheat	nucleus	80.17	80.5
HORVU1Hr1G053350.4	Barley	nucleus, plastid	80.17	80.33
TraesCS1B01G222700.1	Wheat	plastid	79.96	80.13
TraesCS1A01G208700.1	Wheat	nucleus	79.75	80.08
EER91970	Sorghum	plastid	81.63	79.96
Zm00001d029850_P001	Maize	nucleus, plastid	80.38	78.73
Os04t0559100-00	Rice	cytosol	22.55	59.34
GSMUA_Achr5P20570_001	Banana	nucleus	59.08	58.71
CDY57376	Canola	cytosol, extracellular, nucleus	9.19	58.67
PGSC0003DMT400000136	Potato	nucleus	57.2	57.44
KRH15734	Soybean	cytosol	31.11	57.31
Solyc01g094610.2.1	Tomato	nucleus	56.99	57.23
Os07t0481100-01	Rice	cytosol	54.28	56.52
KRH65102	Soybean	nucleus	55.11	54.89
AT4G00460.2	Thale cress	nucleus	53.24	53.91
CDY70620	Canola	nucleus	52.61	53.73
CDY07216	Canola	cytosol	53.03	53.47
CDY51157	Canola	nucleus	50.73	53.41
Bra000971.1-P	Field mustard	nucleus	53.24	53.35
Bra037342.1-P	Field mustard	cytosol	52.82	53.04
KRH48179	Soybean	nucleus	41.34	52.8
VIT_15s0046g02530.t01	Wine grape	plastid	55.11	52.38
CDX74772	Canola	nucleus, plastid	48.85	52.0
Bra004945.1-P	Field mustard	nucleus, plastid	49.48	51.52
KRG94270	Soybean	mitochondrion	11.9	51.35
AT2G45890.1	Thale cress	nucleus, plastid	49.48	51.19
CDY18892	Canola	nucleus	48.23	51.11
KRH00737	Soybean	nucleus, plastid	54.28	50.78
KRH40457	Soybean	cytosol	53.65	50.2
AT1G01700.4	Thale cress	nucleus	53.65	49.9
Os01t0849100-01	Rice	cytosol	48.43	42.49
Os05t0454200-01	Rice	nucleus	48.02	40.49
Os09t0544800-01	Rice	nucleus	46.35	39.57
CDX91908	Canola	cytosol	53.03	38.78
Os02t0272300-01	Rice	plasma membrane	37.16	34.7
Os01t0760300-01	Rice	plasma membrane	36.74	33.78
Os01t0675000-01	Rice	mitochondrion	38.2	33.03
Os05t0560100-01	Rice	mitochondrion	38.41	32.34
Os02t0702600-02	Rice	cytosol	33.4	29.47

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4349314	ProteinID:AAG13489.1	ProteinID:BAF27154.2	ProteinID:BAT11949.1
ProteinID:EEE51362.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR005512	EnsemblPlantsGene:Os10g0550300	EnsemblPlants:Os10t0550300-00	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	UniProt:Q9FWM4	InterPro:RopGEF	UniParc:UPI00000A9D51
RefSeq:XP_015614336.1	RefSeq:XP_015614337.1	SEG:seg	:	:	:

Description

guanine nucleotide exchange factor for Rop 1Rop nucleotide exchanger, PRONE domain containing protein. (Os10t0550300-00)

Coordinates

chr10:-:21584815..21587608

Molecular Weight (calculated)

52058.6 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.264

Length

479 amino acids

Sequence
(BLAST)

001: MESSSSVSVS DESSEANGGG CCSSSTTPSM DAVNLSRTFS DVSSFSEEHG GSGSSVDHSG PFEPPSAAAV SRLIGRRSPA AAASALSLSR LSMKPRADVL
101: DRRSTDDELE LVKERFSKLL LGEDMSGGGK GVCTAVAISN AITNLYATVF GSCHKLEPLP AGKKTMWRRE MDCLLSVCDY IVEFYPSSQT LPDGTKVEVM
201: ATRPRSDIYI NLPALEKLDA MLIEILESFQ KAEFWYADAG TRSFGSATSS STMSSSSFRR STHRNEDRWW LPVPCVPDGG ISGKARKELQ QKRDCATQIH
301: KAAVAINTGV LGDMEVPDSF MAILPKSGKA SVGDGVYRAM LGAEKFSPEY LLDCLDMSSE HEALAMADRV EAAMYVWRRK AGASHGRSRW GAVKELVADD
401: EEQDKNVMLA GRAESLLLCL KHRFPGLSQT TLDTSKIQFN KDIGQAILES YSRVLESLAF NIVSWIDDVL FADKTVRKQ

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.