Factsheet for Bra037342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07216	Canola	cytosol	98.32	98.74
CDY51157	Canola	nucleus	93.71	98.24
Bra000971.1-P	Field mustard	nucleus	92.24	92.05
AT4G00460.2	Thale cress	nucleus	90.78	91.54
KRH65102	Soybean	nucleus	64.36	63.83
Solyc01g094610.2.1	Tomato	nucleus	62.47	62.47
PGSC0003DMT400000136	Potato	nucleus	62.05	62.05
KRH15734	Soybean	cytosol	33.12	60.77
KRH48179	Soybean	nucleus	46.75	59.47
VIT_15s0046g02530.t01	Wine grape	plastid	62.68	59.33
Bra004945.1-P	Field mustard	nucleus, plastid	57.02	59.13
KRH00737	Soybean	nucleus, plastid	62.68	58.4
KRH40457	Soybean	cytosol	61.64	57.42
GSMUA_Achr5P20570_001	Banana	nucleus	55.35	54.77
KRG94270	Soybean	mitochondrion	12.58	54.05
Os10t0550300-00	Rice	plastid	53.04	52.82
EES11256	Sorghum	nucleus	51.78	52.44
Zm00001d002696_P001	Maize	cytosol	50.52	52.16
TraesCS2B01G426300.1	Wheat	cytosol	50.1	51.4
TraesCS1A01G208700.1	Wheat	nucleus	51.36	51.36
TraesCS1D01G211900.1	Wheat	nucleus	51.36	51.36
TraesCS1B01G222700.1	Wheat	plastid	51.36	51.26
TraesCS2A01G408100.1	Wheat	cytosol	49.9	50.85
HORVU1Hr1G053350.4	Barley	nucleus, plastid	50.94	50.84
EER91970	Sorghum	plastid	51.99	50.72
TraesCS2D01G405400.1	Wheat	nucleus	49.9	50.64
Zm00001d029850_P001	Maize	nucleus, plastid	51.36	50.1
Zm00001d021489_P001	Maize	nucleus, plastid	48.43	49.78
Os07t0481100-01	Rice	cytosol	48.01	49.78
EER99384	Sorghum	nucleus, plastid	47.59	49.03
TraesCS6A01G405000.1	Wheat	nucleus	46.96	49.02
HORVU6Hr1G092860.2	Barley	nucleus	46.33	48.36
Os04t0559100-00	Rice	cytosol	18.45	48.35
TraesCS6D01G388300.1	Wheat	nucleus	47.17	48.18
TraesCS6B01G449200.1	Wheat	nucleus	46.75	47.35
HORVU2Hr1G096430.13	Barley	mitochondrion	49.69	44.63
Bra009621.1-P	Field mustard	nucleus	48.22	41.07
Bra015010.1-P	Field mustard	cytosol	45.49	39.67
Bra009152.1-P	Field mustard	cytosol, plastid	47.38	37.98
Bra007183.1-P	Field mustard	cytosol, plastid	44.03	36.78
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.95	35.84
Bra003536.1-P	Field mustard	nucleus	38.16	35.48
Bra021162.1-P	Field mustard	nucleus	32.08	35.25
Bra013249.1-P	Field mustard	nucleus, plastid	37.95	34.94
Bra015068.1-P	Field mustard	nucleus	38.16	34.93
Bra030396.1-P	Field mustard	nucleus	38.78	34.45
Bra006510.1-P	Field mustard	cytosol	35.22	34.43
Bra020048.1-P	Field mustard	nucleus	34.8	33.6
Bra018956.1-P	Field mustard	nucleus	37.11	33.02
Bra027189.1-P	Field mustard	nucleus	36.27	32.64
Bra002246.1-P	Field mustard	plastid	34.17	31.53
Bra005323.1-P	Field mustard	nucleus	32.49	30.94
Bra005322.1-P	Field mustard	nucleus	20.75	25.26
Bra021161.1-P	Field mustard	nucleus	1.47	5.26

Protein Annotations

EnsemblPlants:Bra037342.1	EnsemblPlants:Bra037342.1-P	EnsemblPlantsGene:Bra037342	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI0002541AA8	UniProt:M4F8D0	MapMan:27.4.3.1	:	:

Description

AT4G00460 (E=3e-245) ATROPGEF3, ROPGEF3 | Rho guanyl-nucleotide exchange factor

Coordinates

chrA09:+:971667..973569

Molecular Weight (calculated)

53736.7 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.441

Length

477 amino acids

Sequence
(BLAST)

001: MENVLNPDEN GDRVYHHHQS SIDPNDNSTS ETPVSLTMSM DSFVYPRTCS ESTSGFSDQI DETSSSCSEP SPSDWPVLTE SKSSKCLTTG LELQTNEILE
101: AQEISEPELE TMKERFAKLL LGEDMSGSGK GVCTAVTISN AITNLYATVF GQNLRLEPLE TEKRALWKRE MNCLLSVCDY IVEFIPRCQS LSNGTTVEVM
201: ESRPRADIYI NLPALRKLDS MLMEVLDGFQ NTEFWYAEEG SLSMKSARSA TGSFRKVVVQ RKEEKWWLPV PLVPPEGLSD KARKQLKNKR ESTNQIHKAA
301: MAINSSILSE MEIPDSYMAT LPKCGKSSVG DSIYRYMSGS GRFFPEKLLD SLNIASEHEA VQLADRVEAS MYTWRRKACL SNSKNSWNMV KDLMSTTERT
401: DKNYVMAERA ETLLFCLKQR YPELSQTSLD ICKIQYNKDV GKAVLESYSR VLEGLAFNIV AWIDDVIYVD KTMSGSE

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.