Factsheet for Bra002246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92519	Canola	plastid	96.13	100.0
CDY58963	Canola	cytosol	70.41	97.85
Bra020048.1-P	Field mustard	nucleus	83.17	87.04
AT5G19560.4	Thale cress	mitochondrion	82.01	82.81
Bra006510.1-P	Field mustard	cytosol	72.73	77.05
GSMUA_Achr2P09130_001	Banana	cytosol	44.29	58.57
GSMUA_Achr6P14020_001	Banana	cytosol	48.74	58.47
GSMUA_Achr5P06900_001	Banana	cytosol	47.0	57.72
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.78	57.31
TraesCS6A01G196000.1	Wheat	cytosol	47.58	56.42
OQU84790	Sorghum	cytosol	47.58	55.91
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	51.26	52.48
Zm00001d053307_P002	Maize	cytosol, plastid	48.55	51.97
TraesCSU01G211800.1	Wheat	cytosol	32.5	51.53
GSMUA_Achr3P03410_001	Banana	nucleus	50.29	51.38
Bra013249.1-P	Field mustard	nucleus, plastid	50.68	50.58
Bra015068.1-P	Field mustard	nucleus	50.87	50.48
TraesCSU01G217800.1	Wheat	cytosol	33.08	50.29
TraesCSU01G211700.1	Wheat	cytosol	33.08	50.29
Os02t0272300-01	Rice	plasma membrane	49.71	50.1
GSMUA_Achr3P15410_001	Banana	nucleus	47.78	49.8
TraesCS6D01G183300.1	Wheat	mitochondrion	48.94	49.71
HORVU6Hr1G050860.4	Barley	mitochondrion	48.36	49.7
VIT_11s0016g03740.t01	Wine grape	nucleus	52.03	48.47
Bra021162.1-P	Field mustard	nucleus	40.23	47.93
Bra003536.1-P	Field mustard	nucleus	47.2	47.56
Zm00001d016001_P002	Maize	mitochondrion	48.94	47.38
Bra030396.1-P	Field mustard	nucleus	47.2	45.44
Bra018956.1-P	Field mustard	nucleus	47.0	45.34
Bra027189.1-P	Field mustard	nucleus	43.52	42.45
Bra004945.1-P	Field mustard	nucleus, plastid	31.91	35.87
Bra015010.1-P	Field mustard	cytosol	36.56	34.55
Bra037342.1-P	Field mustard	cytosol	31.53	34.17
Bra005323.1-P	Field mustard	nucleus	33.08	34.13
Bra000971.1-P	Field mustard	nucleus	31.53	34.1
Bra007183.1-P	Field mustard	cytosol, plastid	35.01	31.7
Bra009621.1-P	Field mustard	nucleus	34.24	31.61
Bra009152.1-P	Field mustard	cytosol, plastid	35.2	30.59
Bra005322.1-P	Field mustard	nucleus	22.82	30.1
Bra021161.1-P	Field mustard	nucleus	1.55	6.02

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra002246	EnsemblPlants:Bra002246.1	EnsemblPlants:Bra002246.1-P	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:M4CDG5	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI0002544FB8	SEG:seg	:	:

Description

AT5G19560 (E=6e-208) ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide exchange factor

Coordinates

chrA10:-:10684361..10686961

Molecular Weight (calculated)

59093.8 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.614

Length

517 amino acids

Sequence
(BLAST)

001: MFDGRNSGHS SFSSRGDGRH TPEHELAVHA IPSAQRTRRG RQNRTSDMEA MKARFAKLLL GEDMSGGSEG VTSALALSYA ITNLADSVFG EQMKLQPMYP
101: ETKKIWRKEM NLLLSVVDHI VQFVPSKQMG KNGAFTEIMV TKQRDDLLMN IPALRKLDSV LLETLDNFKD QKDFWYVPRD VEDTSNNGDW RRDENWWLPV
201: VKVPSDGLSE ESRKLLQSQK DSVAQVLKAA TAINDVVLSE MNIPDNYIDS LPKNGKTILG DFLYKILTDE HFDPDYFLSF LDLSTEHKVL DLKNRIEASM
301: VIWKRKMNQK EKDGRSQWGS SVSLERRELL EVRAETVLVM LKHQYPGIPQ SSLEVSKIKN NKDIGQAILE SYSRVLENLA SKIMSRIEDV LEADALVQRQ
401: LMAEAERRSA ESEVESEYEE TEKMESAETP NSRKLSELIG WRLSSDTKKH CSMSDIELFH KAEQEKTVVK SPRALEKLMM KSPRALEKPM MKSPRALPKK
501: LSFLAKLENM RSPTERH

Best Arabidopsis Sequence Match ( AT5G19560.5 )
(BLAST)

001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH

Arabidopsis Description

ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.