Factsheet for GSMUA_Achr3P03410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14020_001	Banana	cytosol	72.33	84.92
GSMUA_Achr5P06900_001	Banana	cytosol	64.23	77.2
GSMUA_Achr2P09130_001	Banana	cytosol	56.13	72.63
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.26	71.93
GSMUA_Achr3P15410_001	Banana	nucleus	66.8	68.15
TraesCS6A01G196000.1	Wheat	cytosol	58.5	67.89
OQU84790	Sorghum	cytosol	58.1	66.82
Solyc07g032730.2.1	Tomato	nucleus	53.95	66.75
Solyc06g066650.2.1	Tomato	nucleus	60.87	65.67
KRH44350	Soybean	nucleus	57.91	64.54
PGSC0003DMT400042632	Potato	nucleus	59.68	64.53
Zm00001d053307_P002	Maize	cytosol, plastid	60.47	63.35
TraesCSU01G211800.1	Wheat	cytosol	40.51	62.88
PGSC0003DMT400006531	Potato	cytosol	62.25	62.75
Os02t0272300-01	Rice	plasma membrane	63.44	62.57
Solyc03g120650.2.1	Tomato	cytosol	62.06	62.55
TraesCS6D01G183300.1	Wheat	mitochondrion	62.65	62.28
HORVU6Hr1G050860.4	Barley	mitochondrion	61.66	62.03
TraesCSU01G211700.1	Wheat	cytosol	41.3	61.47
TraesCSU01G217800.1	Wheat	cytosol	41.3	61.47
Solyc12g044270.1.1	Tomato	nucleus	62.25	60.0
Zm00001d016001_P002	Maize	mitochondrion	61.66	58.43
VIT_11s0016g03740.t01	Wine grape	nucleus	64.03	58.38
KRH09881	Soybean	cytosol	61.46	58.35
KRH23439	Soybean	nucleus	61.46	58.24
PGSC0003DMT400001020	Potato	nucleus	63.64	58.02
Solyc12g007150.1.1	Tomato	nucleus	63.64	58.02
PGSC0003DMT400040374	Potato	nucleus	53.56	57.66
KRH47282	Soybean	nucleus	60.08	56.51
PGSC0003DMT400097197	Potato	nucleus	62.65	56.31
KRH39304	Soybean	nucleus	56.52	55.0
Bra020048.1-P	Field mustard	nucleus	53.16	54.45
CDY44926	Canola	nucleus	53.16	54.45
KRH48369	Soybean	mitochondrion	60.28	54.27
CDY42277	Canola	nucleus	52.77	54.05
AT5G19560.4	Thale cress	mitochondrion	54.15	53.52
CDX88884	Canola	cytosol, plastid	51.19	53.07
Bra006510.1-P	Field mustard	cytosol	51.19	53.07
CDY58963	Canola	cytosol	38.74	52.69
CDX92519	Canola	plastid	51.38	52.31
CDX70882	Canola	cytosol	51.19	51.29
Bra002246.1-P	Field mustard	plastid	51.38	50.29
GSMUA_Achr9P03750_001	Banana	cytosol	40.12	43.56
GSMUA_Achr2P03580_001	Banana	nucleus	39.53	39.45
GSMUA_Achr5P20570_001	Banana	nucleus	37.55	39.42
GSMUA_Achr1P18140_001	Banana	nucleus	41.11	37.61
GSMUA_Achr10P...	Banana	cytosol	38.14	37.26
GSMUA_Achr8P14490_001	Banana	cytosol	14.03	36.98
GSMUA_Achr3P14650_001	Banana	nucleus	41.3	36.8
GSMUA_Achr8P14480_001	Banana	nucleus	18.38	35.91
GSMUA_Achr11P...	Banana	cytosol	21.54	32.63
GSMUA_Achr11P...	Banana	cytosol	10.08	28.02
GSMUA_Achr6P14950_001	Banana	mitochondrion	39.92	15.21

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03410_001	EnsemblPlants:GSMUA_Achr3T03410_001	EnsemblPlantsGene:GSMUA_Achr3G03410_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI0002968F5A	UniProt:M0SBF9	MapMan:27.4.3.1	:	:

Description

ATROPGEF7/ROPGEF7, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G03410_001]

Coordinates

chr3:-:2217406..2220111

Molecular Weight (calculated)

57283.1 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.637

Length

506 amino acids

Sequence
(BLAST)

001: MVRFLRRGHS LNKPEQGEEM FHTAAEGSTV FYSQGGGEGR SLERQQIGCA LDRSSDRAPK SRLGRESGCR HGPPSDMDQM KEKFAKLLLG EDMSGGGTGV
101: SSALALSNAI TNLAASVFSE QRRLEPMAAE RKTRWRKEID WLLSVTDHIV EFVPSRQTSK DGSNMEIMVT QQRRDLQMNI PALRKLDAML IGYLDNFKGH
201: SEFWYVSKDA DESEKGNAKR SDDKWWLPIV KVPPNGLSEV SRKWLQFQKE SVNQVLKAAM AINAQVLMEM EVPEAYIESL PKNGRASLGD AIYRCITDDA
301: FDPDQFLKSM DLSTEHKVLD LKNRIEASII IWMRKMHNKD TKSSWGSAVS VEKREQFEER AETILHLIKQ RFPGIPQSAL DTSKIQYTKD VGQSILESYS
401: RILESLAFAV MSQIEDVLRA DSLTQDPSHA KSEEMEKLKE APNSMTLSDF MGWHFDPDSE AEKKNSESLE DGAKIKKPPN IVTTKKFSYI EKLENLRSLR
501: SPTARH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.