Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042632 | Potato | nucleus | 96.59 | 96.79 |
| GSMUA_Achr5P06900_001 | Banana | cytosol | 62.69 | 69.83 |
| GSMUA_Achr6P14020_001 | Banana | cytosol | 63.75 | 69.37 |
| Solyc12g044270.1.1 | Tomato | nucleus | 77.4 | 69.14 |
| Solyc03g120650.2.1 | Tomato | cytosol | 73.99 | 69.12 |
| GSMUA_Achr2P09130_001 | Banana | cytosol | 55.65 | 66.75 |
| GSMUA_Achr4P10530_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 60.77 | 66.13 |
| KRH44350 | Soybean | nucleus | 63.11 | 65.2 |
| Solyc07g032730.2.1 | Tomato | nucleus | 56.5 | 64.79 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 59.49 | 63.99 |
| OQU84790 | Sorghum | cytosol | 58.64 | 62.5 |
| GSMUA_Achr3P03410_001 | Banana | nucleus | 65.67 | 60.87 |
| TraesCSU01G211800.1 | Wheat | cytosol | 40.94 | 58.9 |
| Zm00001d053307_P002 | Maize | cytosol, plastid | 60.34 | 58.59 |
| AT1G79860.1 | Thale cress | nucleus | 64.18 | 58.45 |
| KRH23439 | Soybean | nucleus | 66.52 | 58.43 |
| KRH09881 | Soybean | cytosol | 66.31 | 58.35 |
| CDX67930 | Canola | nucleus | 60.55 | 58.32 |
| GSMUA_Achr3P15410_001 | Banana | nucleus | 61.62 | 58.27 |
| TraesCSU01G217800.1 | Wheat | cytosol | 41.79 | 57.65 |
| TraesCSU01G211700.1 | Wheat | cytosol | 41.79 | 57.65 |
| TraesCS6D01G183300.1 | Wheat | mitochondrion | 61.41 | 56.58 |
| HORVU6Hr1G050860.4 | Barley | mitochondrion | 60.34 | 56.26 |
| Bra003536.1-P | Field mustard | nucleus | 61.41 | 56.14 |
| Os02t0272300-01 | Rice | plasma membrane | 61.41 | 56.14 |
| KRH47282 | Soybean | nucleus | 63.11 | 55.02 |
| Solyc12g007150.1.1 | Tomato | nucleus | 63.97 | 54.05 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 61.62 | 53.82 |
| Zm00001d016001_P002 | Maize | mitochondrion | 59.49 | 52.25 |
| Solyc04g082110.2.1 | Tomato | nucleus | 36.46 | 37.92 |
| Solyc01g094610.2.1 | Tomato | nucleus | 37.95 | 37.32 |
| Solyc08g006550.2.1 | Tomato | nucleus | 40.72 | 36.04 |
| Solyc01g111930.2.1 | Tomato | nucleus | 43.07 | 35.01 |
| Solyc09g011480.2.1 | Tomato | nucleus | 40.3 | 32.14 |
| Solyc08g075120.2.1 | Tomato | extracellular | 37.95 | 31.62 |
| Solyc10g086660.1.1 | Tomato | nucleus | 41.79 | 28.87 |
| Solyc12g096220.1.1 | Tomato | nucleus | 35.82 | 23.08 |
Protein Annotations
| EnsemblPlants:Solyc06g066650.2.1 | EnsemblPlantsGene:Solyc06g066650.2 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 |
| InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | PFAM:PF03759 | PFscan:PS51334 |
| UniParc:UPI0002765F74 | UniProt:K4C7U0 | MapMan:27.4.3.1 | : | : | : |
Description
No Description!
Coordinates
chr6:-:41879807..41882820
Molecular Weight (calculated)
53082.4 Da
IEP (calculated)
5.875
GRAVY (calculated)
-0.597
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MILETNNNSM AGFKSRLAND STVTSPRSDM ELMKEKFSKL LLGEDMSGGG KGVSSALALS NAITNLAASV FGEMKRLEPM PAERKAKWRK EIGWLLSVTD
101: HIVEFVPCKQ VSKAGTNMEV MVTKQRSDLQ MNIPALRKLD AMLIDCLDGL NDQSEFSYVS KDDESQEEKN SRKDDKWWIP TPKVPPNGLS DPMRKWLQFQ
201: KDSVNQVHKA SMAINAQVLS EMEIPESYIE SLPKNGRASL GDSIYKSITD EYFDPDYFFT TMDMSSEHKI LDLKDRIEAS VVIWKRKMHA KDGKSSWGST
301: ISFEKREMFE ERAELILLIL KQRFPGIPQS KLDISKIQYN KDVGQAILES YSRIIESRAF TIMSRIEDVL QADAMAQNPS NGEVKRPLSD KEEEGKLNSA
401: ENGASMTLLD FIGWTPDQED NNPKKDLKED PTYKDINAKI KCSPPSIVTN KRFSYLENLG MCRSPTARH
101: HIVEFVPCKQ VSKAGTNMEV MVTKQRSDLQ MNIPALRKLD AMLIDCLDGL NDQSEFSYVS KDDESQEEKN SRKDDKWWIP TPKVPPNGLS DPMRKWLQFQ
201: KDSVNQVHKA SMAINAQVLS EMEIPESYIE SLPKNGRASL GDSIYKSITD EYFDPDYFFT TMDMSSEHKI LDLKDRIEAS VVIWKRKMHA KDGKSSWGST
301: ISFEKREMFE ERAELILLIL KQRFPGIPQS KLDISKIQYN KDVGQAILES YSRIIESRAF TIMSRIEDVL QADAMAQNPS NGEVKRPLSD KEEEGKLNSA
401: ENGASMTLLD FIGWTPDQED NNPKKDLKED PTYKDINAKI KCSPPSIVTN KRFSYLENLG MCRSPTARH
001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH
Arabidopsis Description
ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.