CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44350	Soybean	nucleus	79.93	94.71
KRH09881	Soybean	cytosol	74.72	75.42
KRH23439	Soybean	nucleus	74.16	74.72
GSMUA_Achr5P06900_001	Banana	cytosol	53.35	68.17
GSMUA_Achr6P14020_001	Banana	cytosol	54.09	67.52
CDX67930	Canola	nucleus	60.22	66.53
AT1G79860.1	Thale cress	nucleus	63.38	66.21
GSMUA_Achr2P09130_001	Banana	cytosol	47.77	65.73
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.49	64.27
Bra003536.1-P	Field mustard	nucleus	60.78	63.74
Solyc06g066650.2.1	Tomato	nucleus	55.02	63.11
PGSC0003DMT400042632	Potato	nucleus	54.65	62.82
Solyc12g044270.1.1	Tomato	nucleus	60.78	62.29
OQU84790	Sorghum	cytosol	50.74	62.05
TraesCS6A01G196000.1	Wheat	cytosol	49.81	61.47
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	60.78	60.89
Solyc03g120650.2.1	Tomato	cytosol	56.32	60.36
PGSC0003DMT400006531	Potato	cytosol	56.32	60.36
GSMUA_Achr3P03410_001	Banana	nucleus	56.51	60.08
PGSC0003DMT400097197	Potato	nucleus	62.08	59.33
Zm00001d053307_P002	Maize	cytosol, plastid	52.04	57.97
KRH39304	Soybean	nucleus	55.95	57.88
GSMUA_Achr3P15410_001	Banana	nucleus	53.35	57.86
TraesCSU01G211800.1	Wheat	cytosol	34.2	56.44
KRH48369	Soybean	mitochondrion	58.92	56.41
TraesCSU01G217800.1	Wheat	cytosol	34.94	55.29
TraesCSU01G211700.1	Wheat	cytosol	34.94	55.29
HORVU6Hr1G050860.4	Barley	mitochondrion	51.49	55.07
TraesCS6D01G183300.1	Wheat	mitochondrion	52.04	55.01
Os02t0272300-01	Rice	plasma membrane	52.23	54.78
Zm00001d016001_P002	Maize	mitochondrion	53.35	53.75
KRH15734	Soybean	cytosol	19.89	41.15
KRH65102	Soybean	nucleus	35.69	39.92
KRH29101	Soybean	cytosol, plastid	40.15	38.16
KRH00737	Soybean	nucleus, plastid	36.25	38.09
KRH24128	Soybean	cytosol	40.15	38.03
KRH73109	Soybean	nucleus	38.85	37.52
KRH40457	Soybean	cytosol	35.5	37.3
KRH48179	Soybean	nucleus	25.84	37.07
KRH00070	Soybean	nucleus	41.64	36.54
KRG94270	Soybean	mitochondrion	7.43	36.04
KRG97804	Soybean	nucleus	39.59	35.92
KRH31060	Soybean	nucleus	39.78	35.79
KRH75747	Soybean	nucleus	38.1	35.04
KRH65969	Soybean	nucleus	39.03	34.77
KRH15022	Soybean	nucleus	36.25	34.76
KRH07240	Soybean	cytosol, nucleus, plastid	33.09	32.01
KRH76428	Soybean	mitochondrion, nucleus	33.09	31.62
KRH07751	Soybean	cytosol, nucleus, plastid	32.34	31.35
KRH49210	Soybean	nucleus, plastid	41.45	31.19
KRH39757	Soybean	mitochondrion, nucleus	32.34	30.91

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100777496	MapMan:27.4.3.1	EMBL:ACUP02004144	EnsemblPlantsGene:GLYMA_07G019800	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
UniProt:I1KGN8	InterPro:IPR005512	EnsemblPlants:KRH47282	ProteinID:KRH47282	ProteinID:KRH47282.1	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI00023380B1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:1555733..1559067

Molecular Weight (calculated)

60828.2 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.683

Length

538 amino acids

Sequence
(BLAST)

001: MVKAMEQEQE SVRSRLFHFK GMFENTGRHT KSLSIESASA LDPSPSEEEP VSSRSQGSKP LNVLDKVPRP RISREEIVAK EAKDKMVQEM EQMKERFAKL
101: LLGEDMSGGG KGVSSALALS NAFTNLAAAV FGEQKRLEPM PPERKARWRK EIDWLLSVTD YVVEMVPVQQ KNKDGSTMEV MTTRQRTDLH MNIPALRKLD
201: AMLIDTLDNF KDQNEFYYVS KDAENADRNN DTKWWLPTPK VPVEGLSDAA RRFVQYQKDC VNQVLKAAMA INAQTLSEME IPESYIESLP KNGRSSLGDL
301: IYRSITDDFF DPDQLLSAMD MSNEHKIVDL KDRIEASIVI WRRKMNQKDS SKSAWGSAVS VEKREIFEDR AETILLLLKR RFPGTSQSAL DISKIQFNRD
401: VGQAVLESYS RILESLAFTV LSRIEDVLHA DLQTQNPSQS GRKSLSRNPI PKPEKSPTPT PKKEVDKSGS EAMTLSDFMG WNNNQGDSDA KKEAFADSDD
501: FYKDIDNGKP QKLPNVVTDK KVSYLETLGG MRSPTSRH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.