CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73109	Soybean	nucleus	88.77	89.41
KRG97804	Soybean	nucleus	75.22	71.16
KRH31060	Soybean	nucleus	75.4	70.74
GSMUA_Achr9P03750_001	Banana	cytosol	53.48	64.38
PGSC0003DMT400067654	Potato	nucleus	60.96	64.29
Solyc08g006550.2.1	Tomato	nucleus	60.43	63.96
VIT_13s0019g02710.t01	Wine grape	nucleus	67.38	63.42
Bra009152.1-P	Field mustard	cytosol, plastid	58.65	55.29
EES03886	Sorghum	cytosol	51.52	53.03
Os01t0849100-01	Rice	cytosol	51.16	52.56
AT5G05940.1	Thale cress	cytosol	57.04	52.37
CDX70109	Canola	cytosol	58.82	52.13
TraesCS3B01G396500.1	Wheat	cytosol	49.2	51.21
CDX98888	Canola	cytosol	58.11	51.1
TraesCS3D01G357800.1	Wheat	cytosol	48.84	50.93
TraesCS3A01G364400.1	Wheat	nucleus	48.84	50.65
KRH00070	Soybean	nucleus	55.26	50.57
TraesCS1D01G280000.1	Wheat	cytosol	50.09	50.27
Os05t0454200-01	Rice	nucleus	50.62	50.0
KRH65969	Soybean	nucleus	53.83	50.0
Zm00001d042861_P001	Maize	cytosol	50.98	49.91
HORVU1Hr1G072910.3	Barley	cytosol	50.09	49.82
TraesCS1B01G289900.1	Wheat	cytosol	50.09	49.65
CDY41197	Canola	cytosol, plastid	48.31	48.92
CDY40246	Canola	cytosol, plastid	47.95	48.29
EES18335	Sorghum	cytosol	50.45	48.29
KRH75747	Soybean	nucleus	50.09	48.03
AT3G55660.1	Thale cress	cytosol, plastid	49.38	47.84
Zm00001d010062_P001	Maize	peroxisome	48.84	47.49
Bra007183.1-P	Field mustard	cytosol, plastid	47.95	47.11
TraesCS1A01G280900.2	Wheat	cytosol	49.38	47.03
KRH65102	Soybean	nucleus	38.15	44.49
KRH15734	Soybean	cytosol	20.5	44.23
KRH00737	Soybean	nucleus, plastid	39.93	43.75
KRG94270	Soybean	mitochondrion	8.56	43.24
KRH24128	Soybean	cytosol	43.49	42.96
KRH29101	Soybean	cytosol, plastid	43.14	42.76
KRH49210	Soybean	nucleus, plastid	54.37	42.66
HORVU3Hr1G085680.2	Barley	plastid	49.38	42.42
KRH40457	Soybean	cytosol	38.68	42.38
KRH44350	Soybean	nucleus	33.33	41.19
KRH48179	Soybean	nucleus	27.09	40.53
KRH39304	Soybean	nucleus	35.29	38.08
KRH09881	Soybean	cytosol	36.01	37.9
KRH23439	Soybean	nucleus	35.83	37.64
KRH47282	Soybean	nucleus	34.76	36.25
KRH48369	Soybean	mitochondrion	35.65	35.59
KRH07240	Soybean	cytosol, nucleus, plastid	32.62	32.91
KRH07751	Soybean	cytosol, nucleus, plastid	32.44	32.79
KRH76428	Soybean	mitochondrion, nucleus	31.55	31.44
KRH39757	Soybean	mitochondrion, nucleus	31.55	31.44
Zm00001d023356_P001	Maize	cytosol	18.36	29.01
Zm00001d047899_P001	Maize	cytosol	14.26	28.78
Zm00001d037119_P001	Maize	plastid	20.68	26.91
Zm00001d049679_P001	Maize	plastid	20.86	26.47
GSMUA_Achr6P14950_001	Banana	mitochondrion	51.16	21.61

Protein Annotations

EMBL:ACUP02008550	EnsemblPlants:KRH15022	EnsemblPlantsGene:GLYMA_14G064000	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	PFAM:PF03759	PFscan:PS51334
ProteinID:KRH15022	ProteinID:KRH15022.1	UniParc:UPI000295DBE6	UniProt:K7M583	MapMan:27.4.3.1	:

Description

hypothetical protein

Coordinates

chr14:+:5209901..5212715

Molecular Weight (calculated)

62959.3 Da

IEP (calculated)

9.096

GRAVY (calculated)

-0.531

Length

561 amino acids

Sequence
(BLAST)

001: METLGNKGEN FQKKKDGVPS SASDSTHEAK GCSPPPLGWP IRKATLSKCR KSDEKENEPV SHLEDSKFTT VSSKMSGIDA MKERFAKLLL GEDMSGSGKG
101: VCSALAISNA ITNLCATVFG QLWRLEPIPC EKKEMWRREM ECLLSVSDHI VELIPSWQTF PDGSKLEVMT CRPRSDLFMN LPALRKLDNM LLEILDSWKD
201: MEFWYVDQGI VAQDADGSAS FYKRIQRQED KWWLPVPRIP PSGLSENSRK QLNHTRELII TKINNHIIKG NLLLNDNVKN FYTASNGRSC LGDFIYHYIT
301: SEKFSPECLL DCLDLSSEHV ALEIANRVEA SIYVWRRRRA HSKPPPNPNR STTKSSWEIV KDFMADGDKR ELLAERAENV LLSLKQRFPG LTQTTLDTSK
401: IQCNKDVGKS ILESYSRVLE SMAFNIVARI DDLLYVDGLT KHSDRFPLVP MTVSVSGTPH KAIGGTPKSF SPAPPLISPA RGERSPFLRN NHNNIKPQCR
501: GFGVRRVLSN YLGAESKETK IVSNSTVMNG SNPSSNKAEQ PERQKKSHAM NGKTKLTSEV V

Best Arabidopsis Sequence Match ( AT3G55660.1 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.