Factsheet for VIT_13s0019g02710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067654	Potato	nucleus	67.62	75.75
Solyc08g006550.2.1	Tomato	nucleus	66.95	75.28
GSMUA_Achr9P03750_001	Banana	cytosol	57.05	72.96
KRH73109	Soybean	nucleus	66.11	70.74
KRG97804	Soybean	nucleus	68.46	68.8
KRH31060	Soybean	nucleus	68.62	68.39
KRH15022	Soybean	nucleus	63.42	67.38
VIT_08s0007g01380.t01	Wine grape	nucleus	65.6	64.2
EES03886	Sorghum	cytosol	56.54	61.83
Bra009152.1-P	Field mustard	cytosol, plastid	61.07	61.18
Os01t0849100-01	Rice	cytosol	55.03	60.07
TraesCS3B01G396500.1	Wheat	cytosol	53.69	59.37
TraesCS3A01G364400.1	Wheat	nucleus	53.86	59.33
AT5G05940.1	Thale cress	cytosol	60.74	59.25
TraesCS3D01G357800.1	Wheat	cytosol	53.36	59.11
TraesCS1D01G280000.1	Wheat	cytosol	54.7	58.32
TraesCS1B01G289900.1	Wheat	cytosol	54.87	57.77
Zm00001d042861_P001	Maize	cytosol	55.37	57.59
CDX70109	Canola	cytosol	61.07	57.5
HORVU1Hr1G072910.3	Barley	cytosol	54.36	57.45
Os05t0454200-01	Rice	nucleus	54.53	57.22
CDX98888	Canola	cytosol	60.74	56.74
EES18335	Sorghum	cytosol	55.37	56.31
Zm00001d010062_P001	Maize	peroxisome	53.02	54.77
TraesCS1A01G280900.2	Wheat	cytosol	53.86	54.5
CDY41197	Canola	cytosol, plastid	50.5	54.33
CDY40246	Canola	cytosol, plastid	50.34	53.86
Bra007183.1-P	Field mustard	cytosol, plastid	50.34	52.54
AT3G55660.1	Thale cress	cytosol, plastid	51.01	52.5
VIT_08s0007g01390.t01	Wine grape	nucleus	50.5	50.59
VIT_15s0046g02530.t01	Wine grape	plastid	41.78	49.4
HORVU3Hr1G085680.2	Barley	plastid	54.03	49.31
VIT_03s0038g03620.t01	Wine grape	cytosol	48.15	48.89
VIT_18s0001g00550.t01	Wine grape	cytosol	42.11	47.18
VIT_09s0002g04310.t01	Wine grape	cytosol	35.23	46.26
VIT_11s0016g03740.t01	Wine grape	nucleus	38.09	40.9
Zm00001d047899_P001	Maize	cytosol	17.79	38.13
Zm00001d023356_P001	Maize	cytosol	21.48	36.06
Zm00001d037119_P001	Maize	plastid	24.33	33.64
Zm00001d049679_P001	Maize	plastid	24.83	33.48
GSMUA_Achr6P14950_001	Banana	mitochondrion	54.03	24.25
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	32.38	21.16

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100258091	MapMan:27.4.3.1	ProteinID:CCB56285	ProteinID:CCB56285.1	UniProt:F6HNR6
EMBL:FN595998	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	TIGR:TC64240	UniParc:UPI00015C9334	ArrayExpress:VIT_13s0019g02710
EnsemblPlantsGene:VIT_13s0019g02710	EnsemblPlants:VIT_13s0019g02710.t01	unigene:Vvi.19416	RefSeq:XP_010658502.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:3936875..3940429

Molecular Weight (calculated)

66461.2 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.495

Length

596 amino acids

Sequence
(BLAST)

001: MESSVKNSGG FEKGKDGFES SDASGVGTES VTDSSSSSRS SSDFQRDEVR AKEPSSPTLL GWPIRKAEVR KSSVSDVSED ETKSHLNDSK VKQLGSKVSE
101: IEMMKERFSK LLLGEDMSGS GKGVCTALAI SNAITNLCAT IFGQLWRLEP LPPEKKSMWR REMELLLCVS DHIVQLIPSW QTFPDGSKLE VMTCRPRSDI
201: FINLPALRKL DNMLLEILDG FTNTEFWYVD QGIIAPETDG SASFRKPIQR QEEKWWLPVP RVPPGGLSEN SRKQLNHKRE SANQILKAAM AINSNALAEM
301: EVPESFLEAL PKNGRACLGD IIYRYITSDQ FSSECLLDCL DLSSEHVALE IANRVEASIY VWRRRTHHKP MTNPNRSTAK SSWEMVKDLM VDGDKRELLA
401: ERAESLFLSL KQRFPGLTQT TLDTSKIQCN KDVGKSILES YSRVLESLAF NIVARIDDLL YVDDLNKQSD KHSSVPTVSV IAHKRVSIPY SVPVSSTPQK
501: TALTTLSRSP APLISPARGE RTPFLHNKPP RRGFGVKRVL NNYLGVETKT KNSGNPTEGG LTSTIVVEAP ATRTETKNMQ HKKESVTHQA KLRLQH

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.