CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15022	Soybean	nucleus	89.41	88.77
KRG97804	Soybean	nucleus	79.35	74.54
KRH31060	Soybean	nucleus	79.35	73.91
GSMUA_Achr9P03750_001	Banana	cytosol	57.09	68.24
PGSC0003DMT400067654	Potato	nucleus	64.09	67.11
Solyc08g006550.2.1	Tomato	nucleus	63.55	66.79
VIT_13s0019g02710.t01	Wine grape	nucleus	70.74	66.11
Bra009152.1-P	Field mustard	cytosol, plastid	61.94	57.98
EES03886	Sorghum	cytosol	55.3	56.51
Os01t0849100-01	Rice	cytosol	54.94	56.04
AT5G05940.1	Thale cress	cytosol	60.5	55.16
CDX70109	Canola	cytosol	62.3	54.82
TraesCS3B01G396500.1	Wheat	cytosol	52.78	54.55
TraesCS3D01G357800.1	Wheat	cytosol	52.6	54.46
TraesCS3A01G364400.1	Wheat	nucleus	52.6	54.16
CDX98888	Canola	cytosol	61.94	54.08
KRH00070	Soybean	nucleus	59.07	53.67
Os05t0454200-01	Rice	nucleus	54.04	52.99
Zm00001d042861_P001	Maize	cytosol	54.22	52.71
TraesCS1D01G280000.1	Wheat	cytosol	52.78	52.59
KRH65969	Soybean	nucleus	56.73	52.32
HORVU1Hr1G072910.3	Barley	cytosol	52.6	51.95
TraesCS1B01G289900.1	Wheat	cytosol	52.78	51.94
EES18335	Sorghum	cytosol	53.86	51.19
CDY41197	Canola	cytosol, plastid	50.63	50.9
Zm00001d010062_P001	Maize	peroxisome	52.42	50.61
KRH75747	Soybean	nucleus	52.96	50.43
CDY40246	Canola	cytosol, plastid	50.27	50.27
AT3G55660.1	Thale cress	cytosol, plastid	52.24	50.26
KRH15734	Soybean	cytosol	23.34	50.0
TraesCS1A01G280900.2	Wheat	cytosol	52.06	49.24
Bra007183.1-P	Field mustard	cytosol, plastid	50.27	49.04
KRH65102	Soybean	nucleus	41.29	47.82
KRG94270	Soybean	mitochondrion	9.34	46.85
KRH00737	Soybean	nucleus, plastid	42.55	46.29
KRH49210	Soybean	nucleus, plastid	58.53	45.59
KRH24128	Soybean	cytosol	46.14	45.25
KRH48179	Soybean	nucleus	30.34	45.07
KRH29101	Soybean	cytosol, plastid	45.78	45.05
HORVU3Hr1G085680.2	Barley	plastid	52.78	45.02
KRH40457	Soybean	cytosol	41.11	44.73
KRH44350	Soybean	nucleus	36.09	44.27
KRH39304	Soybean	nucleus	38.06	40.77
KRH09881	Soybean	cytosol	38.42	40.15
KRH23439	Soybean	nucleus	38.24	39.89
KRH47282	Soybean	nucleus	37.52	38.85
KRH48369	Soybean	mitochondrion	38.24	37.9
KRH07240	Soybean	cytosol, nucleus, plastid	35.01	35.07
KRH07751	Soybean	cytosol, nucleus, plastid	34.83	34.95
Zm00001d047899_P001	Maize	cytosol	17.24	34.53
KRH39757	Soybean	mitochondrion, nucleus	34.11	33.75
KRH76428	Soybean	mitochondrion, nucleus	34.11	33.75
Zm00001d023356_P001	Maize	cytosol	20.65	32.39
Zm00001d037119_P001	Maize	plastid	23.7	30.63
Zm00001d049679_P001	Maize	plastid	23.7	29.86
GSMUA_Achr6P14950_001	Banana	mitochondrion	54.22	22.74

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100814278	MapMan:27.4.3.1	EMBL:ACUP02001265	EnsemblPlantsGene:GLYMA_02G252600	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
UniProt:I1JI38	InterPro:IPR005512	EnsemblPlants:KRH73109	ProteinID:KRH73109	ProteinID:KRH73109.1	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	UniParc:UPI00023BC48F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:43967578..43971139

Molecular Weight (calculated)

62399.3 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.537

Length

557 amino acids

Sequence
(BLAST)

001: MDALCNKGEN FQKKKDGVPS SSSDSTHECS SPSLGWPIRK ATLSKCRKSD EKENEPVSHL EDSKFTTVSS KMSGIDAMKE RFAKLLLGED MSGSGKGVCS
101: ALAISNAITN LCATVFGQLW RLEPIPCEKK EMWRREMEWL LSVSDHIVEL IPSWQTFPDG SKLEVMTCRP RSDLFMNLPA LHKLDNMLLE ILDGCKDMEF
201: WYVDQGIVAQ DADGSASFCK RIQRQEDKWW LPVPRVPPSG LSENSRKQLN HTRECASQIL KASMAINNGA LAEMEVPESY LETLPKNGRT CLGDFIYHYI
301: TSEKFSPECL LDCLDLSSEH VALEIANCVE ASIYVWRRRA HSKPPANPNR SSTKSSWEIV KDFMADGDKR ELLAERAENV LLSLKQRFPG LTQTTLDTSK
401: IQCNKDIGKS ILESYSRVLE SMAFNIVARI EDLLYVDDLT KHSDRFPLVP MTVSVSGTPH KAIGTPRSFS PAPPLISPAR GERSPFLGNN HNNNNNIKPQ
501: RRGFGVRRVL SNYLGAESKE TKILSNSTVV NGSNTSNNKE EQPERQKKSH AMHGKTK

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.