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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 4
  • cytosol 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009152.1-P Field mustard cytosol, plastid 92.1 97.98
CDX98888 Canola cytosol 92.42 91.69
AT5G05940.1 Thale cress cytosol 81.52 84.45
GSMUA_Achr9P03750_001 Banana cytosol 49.45 67.17
PGSC0003DMT400067654 Potato nucleus 54.34 64.66
Solyc08g006550.2.1 Tomato nucleus 53.55 63.96
KRH73109 Soybean nucleus 54.82 62.3
CDY57376 Canola cytosol, extracellular, nucleus 7.27 61.33
VIT_13s0019g02710.t01 Wine grape nucleus 57.5 61.07
KRG97804 Soybean nucleus 55.92 59.7
KRH15022 Soybean nucleus 52.13 58.82
KRH31060 Soybean nucleus 55.29 58.53
EES03886 Sorghum cytosol 47.71 55.41
Os01t0849100-01 Rice cytosol 47.55 55.13
TraesCS3D01G357800.1 Wheat cytosol 46.29 54.46
TraesCS3B01G396500.1 Wheat cytosol 46.29 54.36
TraesCS3A01G364400.1 Wheat nucleus 46.45 54.34
TraesCS1D01G280000.1 Wheat cytosol 47.08 53.31
CDY40325 Canola nucleus 47.08 53.21
CDY10476 Canola nucleus 47.08 53.21
TraesCS1B01G289900.1 Wheat cytosol 47.24 52.83
HORVU1Hr1G072910.3 Barley cytosol 46.92 52.66
Zm00001d042861_P001 Maize cytosol 47.24 52.18
Os05t0454200-01 Rice nucleus 46.45 51.76
CDY41197 Canola cytosol, plastid 45.02 51.44
CDY40246 Canola cytosol, plastid 44.87 50.99
TraesCS1A01G280900.2 Wheat cytosol 46.6 50.08
EES18335 Sorghum cytosol 46.29 50.0
Zm00001d010062_P001 Maize peroxisome 45.02 49.39
CDY07216 Canola cytosol 36.33 48.42
CDY51157 Canola nucleus 34.6 48.13
CDY70620 Canola nucleus 35.55 47.97
CDX85176 Canola cytosol 39.65 45.89
CDX77457 Canola cytosol 39.49 45.7
CDX74772 Canola nucleus, plastid 32.39 45.56
CDY18892 Canola nucleus 32.39 45.35
HORVU3Hr1G085680.2 Barley plastid 46.76 45.33
CDY69871 Canola cytosol 7.9 44.64
CDY45633 Canola nucleus 33.33 40.34
CDX67930 Canola nucleus 30.81 40.04
CDY39783 Canola mitochondrion 32.7 39.43
CDY03297 Canola mitochondrion 32.39 39.2
CDY46477 Canola nucleus 32.07 38.96
CDY03296 Canola nucleus 20.22 38.67
CDX77402 Canola nucleus 31.75 38.58
CDX88884 Canola cytosol, plastid 29.23 37.91
CDX87879 Canola nucleus 33.33 37.88
CDY44926 Canola nucleus 29.23 37.45
CDY42277 Canola nucleus 29.23 37.45
CDX97723 Canola nucleus 31.44 37.41
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 31.44 37.06
CDX92519 Canola plastid 28.75 36.62
CDX70882 Canola cytosol 29.07 36.44
CDY58963 Canola cytosol 21.01 35.75
CDY30136 Canola nucleus 30.81 35.45
CDY67259 Canola nucleus 33.02 34.78
CDY52982 Canola nucleus 32.86 34.61
CDX91908 Canola cytosol 35.55 34.35
CDY12411 Canola cytosol 6.95 34.11
CDX84189 Canola cytosol 26.07 33.6
Zm00001d047899_P001 Maize cytosol 14.69 33.45
CDY31706 Canola cytosol 26.07 32.8
CDY28381 Canola nucleus 30.81 32.55
Zm00001d023356_P001 Maize cytosol 18.01 32.11
CDY20181 Canola nucleus 30.65 31.96
Zm00001d037119_P001 Maize plastid 20.54 30.16
CDY62299 Canola cytosol, nucleus, plastid 26.22 29.64
Zm00001d049679_P001 Maize plastid 20.54 29.41
CDY12303 Canola nucleus 25.75 28.95
CDX93028 Canola nucleus 20.85 27.85
GSMUA_Achr6P14950_001 Banana mitochondrion 46.13 21.99
Protein Annotations
EnsemblPlants:CDX70109EnsemblPlantsGene:GSBRNA2T00136218001Gene3D:1.20.58.1310Gene3D:1.20.58.2010GO:A0A078C1N2GO:GO:0003674
GO:GO:0005089GO:GO:0005488GO:GO:0005515InterPro:IPR005512InterPro:PRONE_domInterPro:RopGEF
PANTHER:PTHR33101PANTHER:PTHR33101:SF1PFAM:PF03759PFscan:PS51334ProteinID:CDX70109ProteinID:CDX70109.1
SEG:segUniParc:UPI0004EE430DMapMan:27.4.3.1:::
Description
BnaA10g24580D
Coordinates
chrLK031790:-:3179252..3185142
Molecular Weight (calculated)
70588.4 Da
IEP (calculated)
9.424
GRAVY (calculated)
-0.421
Length
633 amino acids
Sequence
(BLAST)
001: MENLVKSCAG IDKKRSVLTE SKERSSTNGS SYEGSSCPAS SSPPPSSILG WPIRKASFRK SSKENIKFDH NKPALVADSG FKGKEVNIAD VDMMKERFAK
101: LLLGEDMSGS GKGVCTALAI SNAITNLCAT IFGQLWRLEP LPSEKKAMWR REMEWILSVS DHIVELTPST QTYPDGKKFE VMTCKPRFDL FINLPALRKL
201: DNMLLDVLAS FKKTEFWYVD QGIVSSENDG SASFRRKIQR QEEKWWLPVP RLAPNGLTED ARTELNHKRD CATQILKAAM AINSVSLTEM DVPESYLETL
301: PKNGRSCLGD VIYRYITSEK FSAECLLDCL DLSSEHIALD IANRVEASIY VWRRRVQTKL GVNNNTSSST TPKLSWEMVK DLMAAGDKRG LLVERSETLL
401: RCLKQRFPSL TQTSLDISKI QSNKDIGKSI LESYSRALES LASNIVARID DLLYVDDLTK QPDDNNVLSS PRVSVMAHKK VVPVPYLLSA SGTPYRTSFS
501: TTPGFSPAPR ISPRQGERTP SYSSKNTIKV NEKGLPSRGF GVRRVLNNYL GMESKLKVCV DPSESPETAV RNQFGKEGEE EKKRDSITSK GPPNFCLILV
601: STSANQNIQI FPPVTRVTRV RSPATASTFY FTH
Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)
001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S
Arabidopsis Description
ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.