CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006510.1-P	Field mustard	cytosol	98.36	98.36
CDX70882	Canola	cytosol	97.75	94.46
CDY44926	Canola	nucleus	76.23	75.3
CDX92519	Canola	plastid	76.64	75.25
CDY58963	Canola	cytosol	56.97	74.73
CDY42277	Canola	nucleus	75.41	74.49
AT5G19560.4	Thale cress	mitochondrion	76.43	72.85
GSMUA_Achr2P09130_001	Banana	cytosol	47.34	59.08
GSMUA_Achr6P14020_001	Banana	cytosol	51.23	58.0
GSMUA_Achr5P06900_001	Banana	cytosol	50.0	57.96
TraesCS6A01G196000.1	Wheat	cytosol	51.23	57.34
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.59	56.15
OQU84790	Sorghum	cytosol	50.41	55.91
CDY03296	Canola	nucleus	36.68	54.08
TraesCSU01G211800.1	Wheat	cytosol	35.25	52.76
Zm00001d053307_P002	Maize	cytosol, plastid	51.02	51.55
TraesCSU01G217800.1	Wheat	cytosol	35.86	51.47
TraesCSU01G211700.1	Wheat	cytosol	35.86	51.47
CDY46477	Canola	nucleus	54.92	51.44
CDX77402	Canola	nucleus	54.92	51.44
CDY39783	Canola	mitochondrion	55.33	51.43
CDY03297	Canola	mitochondrion	54.92	51.24
GSMUA_Achr3P03410_001	Banana	nucleus	53.07	51.19
Os02t0272300-01	Rice	plasma membrane	53.28	50.68
HORVU6Hr1G050860.4	Barley	mitochondrion	52.05	50.5
TraesCS6D01G183300.1	Wheat	mitochondrion	52.25	50.1
CDX67930	Canola	nucleus	49.18	49.28
GSMUA_Achr3P15410_001	Banana	nucleus	49.18	48.39
VIT_11s0016g03740.t01	Wine grape	nucleus	53.69	47.21
Zm00001d016001_P002	Maize	mitochondrion	51.43	47.0
CDY45633	Canola	nucleus	50.2	46.85
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	49.39	44.88
CDY69871	Canola	cytosol	10.25	44.64
CDX87879	Canola	nucleus	50.2	43.99
CDX97723	Canola	nucleus	45.49	41.73
CDY52982	Canola	nucleus	50.2	40.77
CDY67259	Canola	nucleus	50.2	40.77
CDY30136	Canola	nucleus	45.49	40.36
CDY57376	Canola	cytosol, extracellular, nucleus	5.94	38.67
CDX93028	Canola	nucleus	37.3	38.4
CDY18892	Canola	nucleus	34.22	36.95
CDY28381	Canola	nucleus	45.29	36.89
CDX74772	Canola	nucleus, plastid	34.02	36.89
CDY20181	Canola	nucleus	45.08	36.24
CDY70620	Canola	nucleus	34.02	35.39
CDY51157	Canola	nucleus	32.99	35.38
CDY07216	Canola	cytosol	34.22	35.16
CDY12411	Canola	cytosol	9.02	34.11
CDX77457	Canola	cytosol	37.7	33.64
CDX85176	Canola	cytosol	37.5	33.46
CDY31706	Canola	cytosol	33.61	32.6
CDX84189	Canola	cytosol	32.38	32.18
CDY41197	Canola	cytosol, plastid	36.27	31.95
CDY40325	Canola	nucleus	36.48	31.79
CDY10476	Canola	nucleus	36.48	31.79
CDY40246	Canola	cytosol, plastid	36.07	31.6
CDX70109	Canola	cytosol	37.91	29.23
CDY62299	Canola	cytosol, nucleus, plastid	33.2	28.93
CDX98888	Canola	cytosol	37.5	28.68
CDY12303	Canola	nucleus	32.99	28.6
CDX91908	Canola	cytosol	34.02	25.34

Protein Annotations

EnsemblPlants:CDX88884	EnsemblPlantsGene:GSBRNA2T00148973001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:A0A078DJQ8	GO:GO:0003674
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF
PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334	ProteinID:CDX88884	ProteinID:CDX88884.1
UniParc:UPI0004EDF294	MapMan:27.4.3.1	:	:	:	:

Description

BnaA03g07650D

Coordinates

chrLK031856:-:1435701..1438192

Molecular Weight (calculated)

56129.7 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.562

Length

488 amino acids

Sequence
(BLAST)

001: MFDGRNKGHS SFPSRRDSKQ IPEQELTIRG MNPASSSRRG KQARTSDMEM MRERFAKLLL GEDMSGGEKG VTSALALSNA ITNLADSMFG EHMKLQPMDL
101: KRKKIWRKEM NWLLSVVDHI VQFVPSKQVA KTGDFTEIMV TKKRDDLLMN IPALRKLDSV LLETLDKFKD HKDFWYVQKD VENTENNGNW RKDENWLLPV
201: VKVPPDGLSE ESRKFLRSQK ESVAQVLKAA TAINALVLSE MHIPDNYIDS LPKKGKTSLG DLLYKSITDE YFDPGYFLSS CDLSTKHKVL DLKNRIEASM
301: VIWKRKMNHK EQWGSFVSLE KRELFEVRVE TILAMLKQKF PKILQSSLEI SKIKNNKDVG HAILESYSRV LESLAAKIMS RIEDVLEADV LVHIQLMETE
401: RKFESDAEPE YEKTEKVALA VTPKSTKLTD LIGWRFSSDT EQSSTSDIEL FHEAEQEKEI MKSPIRVQPM KLSYLAKLEN LRSPSERH

Best Arabidopsis Sequence Match ( AT5G19560.5 )
(BLAST)

001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH

Arabidopsis Description

ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.