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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24620.1 CDY00332 AT5G62880.1 22500990
AT3G24620.1 CDY30738 AT5G62880.1 22500990
AT3G24620.1 CDY45748 AT5G62880.1 22500990
AT3G24620.1 CDY56740 AT5G62880.1 22500990
AT3G24620.1 CDY68200 AT5G62880.1 22500990
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03296 Canola nucleus 53.8 77.04
Bra013249.1-P Field mustard nucleus, plastid 80.17 73.36
CDX77402 Canola nucleus 73.42 66.79
CDY46477 Canola nucleus 72.78 66.22
AT3G24620.1 Thale cress nucleus 72.36 65.58
CDY03297 Canola mitochondrion 71.94 65.2
CDY39783 Canola mitochondrion 71.52 64.57
CDY58963 Canola cytosol 34.39 43.82
VIT_09s0002g04310.t01 Wine grape cytosol 41.56 43.39
Solyc07g032730.2.1 Tomato nucleus 37.34 43.28
CDX67930 Canola nucleus 43.04 41.89
PGSC0003DMT400040374 Potato nucleus 39.45 39.79
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 44.51 39.29
KRH39304 Soybean nucleus 42.41 38.65
KRH48369 Soybean mitochondrion 45.78 38.61
PGSC0003DMT400001020 Potato nucleus 45.15 38.56
Solyc12g007150.1.1 Tomato nucleus 44.3 37.84
CDX88884 Canola cytosol, plastid 38.4 37.3
CDY44926 Canola nucleus 38.82 37.25
CDY42277 Canola nucleus 38.82 37.25
CDY45633 Canola nucleus 40.08 36.33
CDX70882 Canola cytosol 38.61 36.24
CDX92519 Canola plastid 37.34 35.61
CDX87879 Canola nucleus 40.08 34.11
CDX97723 Canola nucleus 37.55 33.46
CDY30136 Canola nucleus 37.34 32.18
CDY67259 Canola nucleus 40.51 31.95
CDY52982 Canola nucleus 40.51 31.95
CDY28381 Canola nucleus 38.61 30.55
CDY20181 Canola nucleus 38.19 29.82
CDX74772 Canola nucleus, plastid 24.89 26.22
CDY51157 Canola nucleus 24.89 25.93
CDY18892 Canola nucleus 24.68 25.89
CDY70620 Canola nucleus 25.11 25.37
CDY07216 Canola cytosol 25.32 25.26
CDY69871 Canola cytosol 5.7 24.11
CDX77457 Canola cytosol 26.79 23.22
CDX85176 Canola cytosol 26.37 22.85
CDY40246 Canola cytosol, plastid 26.58 22.62
CDY41197 Canola cytosol, plastid 26.37 22.56
CDY40325 Canola nucleus 26.37 22.32
CDY10476 Canola nucleus 26.37 22.32
CDY12411 Canola cytosol 5.91 21.71
CDY62299 Canola cytosol, nucleus, plastid 24.68 20.89
CDX70109 Canola cytosol 27.85 20.85
CDX98888 Canola cytosol 27.64 20.53
CDY31706 Canola cytosol 21.52 20.28
CDY12303 Canola nucleus 24.05 20.25
CDX84189 Canola cytosol 20.89 20.16
CDX91908 Canola cytosol 24.89 18.02
CDY57376 Canola cytosol, extracellular, nucleus 2.11 13.33
Protein Annotations
EnsemblPlants:CDX93028EnsemblPlantsGene:GSBRNA2T00154920001Gene3D:1.20.58.1310GO:A0A078E0F3GO:GO:0003674GO:GO:0005089
GO:GO:0005488GO:GO:0005515InterPro:IPR005512InterPro:PRONE_domInterPro:RopGEFPANTHER:PTHR33101
PANTHER:PTHR33101:SF10PFAM:PF03759PFscan:PS51334ProteinID:CDX93028ProteinID:CDX93028.1SEG:seg
UniParc:UPI0004EECE08MapMan:27.4.3.1::::
Description
BnaA03g37500D
Coordinates
chrLK031874:-:787779..791004
Molecular Weight (calculated)
54002.0 Da
IEP (calculated)
6.044
GRAVY (calculated)
-0.404
Length
474 amino acids
Sequence
(BLAST)
001: MVAALERGLS ASKSFNFKRM FDSPSTKQQQ SQTLVLENGD SHLVESNTPE SQNSDSLEES PVESIPPMIS PLTRPGKRPD RQQAGESFFS ITCFFLVRVS
101: PGPYSYVQDR WIFFSNNLFF FWFGLVQDYV QDRWIFFPNN LFFFVRVNNS VKFNKVLNHE ILEIIDNSVK FNKFCLKQFG SHIVMYKTDG SFFPITFPPG
201: GLSDPARRML YFQKDSVTQV QKAAMAINAQ VLSEMAIPER YIDSLPKNGR ASLGDSIYKS ITEEWFDPAQ FLSMMDLSTE HKVLDLKNKI EASVVIWKRK
301: LHVKDSKSSW GSAVSLEKRE LFEERAETIL VFLKQKFPGL PQSSLDISKI QFNKDIGQAV LESYSRILES LAYTVMSRIE DVLYTDSLAL KQALLAEETS
401: DGGRTETDSE SPGSSNSGEE TEKLDRQHSK TLFDFMGWSD KPTTPPSVTP KKLSYLEKLE NFNGFRSPKD TNLS
Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
Arabidopsis Description
ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.