Factsheet for VIT_09s0002g04310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	VIT_17s0000g07890.t01	AT5G62880.1	22500990
AT4G13240.1	VIT_17s0000g07890.t01	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g032730.2.1	Tomato	nucleus	61.23	67.97
CDY03296	Canola	nucleus	44.71	61.33
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.66	57.23
VIT_11s0016g03740.t01	Wine grape	nucleus	69.82	57.12
KRH39304	Soybean	nucleus	63.88	55.77
PGSC0003DMT400040374	Potato	nucleus	57.71	55.74
AT3G24620.1	Thale cress	nucleus	63.88	55.45
AT4G13240.1	Thale cress	nucleus	63.0	55.32
Bra015068.1-P	Field mustard	nucleus	63.22	55.09
CDX77402	Canola	nucleus	63.22	55.09
CDY03297	Canola	mitochondrion	63.44	55.07
CDY46477	Canola	nucleus	63.0	54.89
CDY39783	Canola	mitochondrion	63.44	54.86
KRH48369	Soybean	mitochondrion	67.84	54.8
Bra013249.1-P	Field mustard	nucleus, plastid	62.33	54.63
PGSC0003DMT400001020	Potato	nucleus	66.74	54.59
Solyc12g007150.1.1	Tomato	nucleus	66.74	54.59
CDX93028	Canola	nucleus	43.39	41.56
VIT_18s0001g00550.t01	Wine grape	cytosol	41.63	35.53
VIT_03s0038g03620.t01	Wine grape	cytosol	45.59	35.26
VIT_13s0019g02710.t01	Wine grape	nucleus	46.26	35.23
VIT_15s0046g02530.t01	Wine grape	plastid	38.99	35.12
VIT_08s0007g01380.t01	Wine grape	nucleus	45.37	33.83
VIT_08s0007g01390.t01	Wine grape	nucleus	44.05	33.61
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	38.11	18.97

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:100261758	wikigene:100261758	MapMan:27.4.3.1	ProteinID:CCB59465
ProteinID:CCB59465.1	UniProt:F6HYE2	EMBL:FN596494	GO:GO:0000003	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0030154	GO:GO:0040007	GO:GO:0065009	GO:GO:0080092	GO:GO:0090406	InterPro:IPR005512
EntrezGene:LOC100261758	wikigene:LOC100261758	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI00015C8995	ArrayExpress:VIT_09s0002g04310	EnsemblPlantsGene:VIT_09s0002g04310	EnsemblPlants:VIT_09s0002g04310.t01
unigene:Vvi.20415	RefSeq:XP_002279325	RefSeq:XP_002279325.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:3952916..3955814

Molecular Weight (calculated)

51378.4 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.557

Length

454 amino acids

Sequence
(BLAST)

001: MKERFSKLLL GEDMSGHGKG VSSALALSNA ITNVAASVFG ELRRLEPMPV ERKTMWRREI DWLLSVSDHI VEMVPQQRSK DGTSMEVMVT RQRCDLLMNI
101: PALRKLDAML IDTLENFKDQ KEFYYPSGDA KDSSREDSQR TSDKWWIPNA KVPPNGLSEV TRKWLQFQKD SVNQVLKAAM AINAQILSEM EIPENYIESL
201: PKNGRASLGD SIYKSITVDH FDPGQFLSTM DLSSNRKILD LKNRIEASIV IWKRKMHNKD GKSAWASAVS LEKRELFEER AETILLIIKQ RYPGLDQSQL
301: DINKIQFNQD VGHAILESYS RILETLAFTV LSRIEDVLYA DSLAQNPALA SCKRNPLRGS SLDPEPLNFP NPKEEIEKLS TGTPQSMTLS DFMGWNLEKE
401: DGEEKKGSGG NSEELSKNDE KPMTKIANII TNKKVSYIEK LENLGGLRSP TARH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.