Factsheet for VIT_17s0000g07890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03620.t01
VIT_03s0038g04360.t01
VIT_07s0031g00200.t01
VIT_08s0058g00780.t01
VIT_11s0016g00100.t01
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48040.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G48040.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946
AT5G62880.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT5G62880.1	VIT_08s0058g00780.t01	AT2G38440.1	17267444
AT5G62880.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444
AT5G62880.1	VIT_07s0031g00200.t01	AT4G36910.1	21798944
AT5G62880.1	VIT_03s0038g03620.t01	AT4G38430.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114070.2.1	Tomato	cytosol	89.52	89.52
PGSC0003DMT400063229	Potato	cytosol	89.05	89.05
KRH57035	Soybean	cytosol	86.19	86.6
Bra035878.1-P	Field mustard	cytosol	83.81	85.85
TraesCS6D01G288300.1	Wheat	cytosol	86.67	85.45
TraesCS6A01G309000.2	Wheat	cytosol	86.19	84.98
AT5G62880.1	Thale cress	cytosol	86.67	84.65
Bra010128.1-P	Field mustard	cytosol	83.81	84.62
AT3G48040.1	Thale cress	cytosol	83.81	84.62
KRH54429	Soybean	cytosol	26.19	84.62
Os02t0742200-01	Rice	cytosol	86.19	84.58
KRH63489	Soybean	cytosol	85.24	84.43
EES05544	Sorghum	cytosol	85.71	84.11
CDY56740	Canola	cytosol	85.71	83.33
Bra029240.1-P	Field mustard	cytosol	85.24	83.26
CDY00332	Canola	cytosol	85.24	83.26
CDY30738	Canola	cytosol	85.24	83.26
KRH54430	Soybean	cytosol	57.62	82.88
EER88130	Sorghum	cytosol	84.76	82.79
Os06t0234200-03	Rice	cytosol	84.76	82.79
TraesCS6B01G338000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.81	82.63
CDY45748	Canola	cytosol	83.33	82.16
HORVU6Hr1G076210.5	Barley	cytosol	83.81	81.86
TraesCS7B01G096200.1	Wheat	cytosol	82.86	81.69
TraesCS7A01G191400.1	Wheat	cytosol	82.38	81.22
TraesCS7D01G192400.1	Wheat	cytosol	82.38	81.22
CDY68200	Canola	cytosol	69.52	80.66
VIT_18s0001g14670.t01	Wine grape	cytosol	75.24	80.2
VIT_03s0038g02380.t01	Wine grape	cytosol	74.29	78.79
VIT_12s0028g02630.t01	Wine grape	cytosol, nucleus, plastid	72.38	77.55
PGSC0003DMT400063227	Potato	cytosol	59.05	77.5
VIT_04s0023g03860.t01	Wine grape	cytosol	71.43	76.53
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	75.71	75.71
VIT_15s0021g01130.t01	Wine grape	cytosol	69.05	73.23
KRH03338	Soybean	cytosol, plastid	84.29	69.69
Zm00001d052273_P004	Maize	plastid	71.9	69.59
HORVU7Hr1G038980.5	Barley	cytosol	81.9	68.8
VIT_10s0003g00570.t01	Wine grape	cytosol	53.81	66.08
GSMUA_Achr6P36120_001	Banana	cytosol	85.71	64.75
Zm00001d044802_P001	Maize	cytosol	82.38	60.28
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	83.81	34.78

Protein Annotations

EntrezGene:100253515	wikigene:100253515	MapMan:27.4.1	Gene3D:3.40.50.300	EMBL:AM425074	ProteinID:CAN60154
ProteinID:CAN60154.1	ProteinID:CBI15071	ProteinID:CBI15071.3	UniProt:D7SHW1	EMBL:FN594950	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	EntrezGene:LOC100253515	wikigene:LOC100253515
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF149
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI000172043C	ArrayExpress:VIT_17s0000g07890	EnsemblPlantsGene:VIT_17s0000g07890	EnsemblPlants:VIT_17s0000g07890.t01
unigene:Vvi.13518	RefSeq:XP_002283394	RefSeq:XP_002283394.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:8845207..8853597

Molecular Weight (calculated)

23409.4 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.155

Length

210 amino acids

Sequence
(BLAST)

001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPSDYIPT VFDNFSANVV AEGTTVNLGL WDTAGQEDYN RLRPLSYQGA DVFILAFSLV SRASYENVLK
101: KWIPELQHFA PGIPIVLVGT KLDLREDKHY LADHPGLVPV TTAQGEELRK QIGAAYYIEC SSKTQQNVKA VFDAAIKVVI KPQQKQKEKK KKRHRGWLNV
201: FVGRSLMCFK

Best Arabidopsis Sequence Match ( AT5G62880.1 )
(BLAST)

001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSANVV VEGTTVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLSFSLV SRASYENVFK
101: KWIPELQHFA PGVPLVLVGT KLDLREDKHY LADHPGLSPV TTAQGEELRK LIGATYYIEC SSKTQQNVKA VFDSAIKEVI KPLVKQKEKT KKKKKQKSNH
201: GCLSNVLCGR IVTRH

Arabidopsis Description

ARAC10ROP11 [Source:UniProtKB/TrEMBL;Acc:A0A178UC00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.