Factsheet for VIT_12s0028g02630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27004	Soybean	cytosol, nucleus, plastid	94.9	94.9
KRH25686	Soybean	cytosol	92.86	92.39
GSMUA_Achr10P...	Banana	cytosol	91.84	91.84
KRH22321	Soybean	cytosol, nucleus, plasma membrane	92.86	90.55
GSMUA_Achr6P13740_001	Banana	cytosol	89.29	89.29
VIT_03s0038g02380.t01	Wine grape	cytosol	88.27	87.37
VIT_18s0001g14670.t01	Wine grape	cytosol	87.76	87.31
VIT_04s0023g03860.t01	Wine grape	cytosol	83.16	83.16
VIT_10s0003g00570.t01	Wine grape	cytosol	71.43	81.87
VIT_15s0021g01130.t01	Wine grape	cytosol	82.14	81.31
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	78.06	72.86
VIT_17s0000g07890.t01	Wine grape	cytosol	77.55	72.38

Protein Annotations

EntrezGene:100241806	wikigene:100241806	EntrezGene:100242140	wikigene:100242140	MapMan:27.4.1	Gene3D:3.40.50.300
EMBL:AM425083	ProteinID:CAN77878	ProteinID:CAN77878.1	ProteinID:CBI21938	ProteinID:CBI21938.3	UniProt:E0CTM2
EMBL:FN595235	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578
EntrezGene:LOC100241806	wikigene:LOC100241806	EntrezGene:LOC100242140	wikigene:LOC100242140	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF178	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGR:TC58827
TIGRFAMs:TIGR00231	UniParc:UPI000172043A	ArrayExpress:VIT_12s0028g02630	EnsemblPlantsGene:VIT_12s0028g02630	EnsemblPlants:VIT_12s0028g02630.t01	unigene:Vvi.15101
unigene:Vvi.19427	RefSeq:XP_002277471	RefSeq:XP_002277471.1	RefSeq:XP_002278788	RefSeq:XP_002278788.1	SEG:seg

Description

No Description!

Coordinates

chr12:+:3411003..3413378

Molecular Weight (calculated)

21721.3 Da

IEP (calculated)

9.719

GRAVY (calculated)

-0.101

Length

196 amino acids

Sequence
(BLAST)

001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENISKKW
101: IPELRHYAPT VPIVLVGTKL DLREDKQFLI DHPGATPITT AQGEDLKKMI GAAVYIECSS KTQQNVKAVF DAAIKVVLQP PKPKKRRRKS RPCVFL

Best Arabidopsis Sequence Match ( AT1G75840.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPIYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKNK NRCVFL

Arabidopsis Description

ARAC5Rac-like GTP-binding protein ARAC5 [Source:UniProtKB/Swiss-Prot;Acc:Q38937]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.