Factsheet for VIT_04s0023g03860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g04510.t01
VIT_08s0058g00780.t01
VIT_11s0016g00100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51300.1	VIT_04s0008g04510.t01	AT4G32650.1	15299147
AT4G35950.1	VIT_08s0058g00780.t01	AT2G38440.1	17267444
AT4G35950.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040869.1-P	Field mustard	cytosol	82.14	92.0
AT2G17800.1	Thale cress	cytosol	92.35	91.88
AT4G35950.1	Thale cress	cytosol	91.33	90.86
Bra017740.1-P	Field mustard	cytosol	91.33	90.86
CDY07816	Canola	cytosol	86.73	90.43
PGSC0003DMT400009227	Potato	cytosol	90.82	90.36
Bra011651.1-P	Field mustard	cytosol	90.82	90.36
KRH08028	Soybean	cytosol	90.82	90.36
CDY33284	Canola	cytosol, plastid	90.82	90.36
CDY26832	Canola	cytosol	90.82	90.36
Bra038892.1-P	Field mustard	cytosol, plastid	90.82	90.36
KRH76629	Soybean	cytosol	90.31	89.85
KRH28825	Soybean	cytosol	90.31	89.85
Solyc02g083580.2.1	Tomato	nucleus	90.31	89.85
AT3G51300.1	Thale cress	cytosol, plastid	90.31	89.85
CDX77994	Canola	cytosol, plastid	89.8	89.34
CDX73732	Canola	cytosol, plastid	89.8	89.34
Bra037248.1-P	Field mustard	cytosol	89.8	89.34
CDY29012	Canola	cytosol, plastid	89.8	89.34
PGSC0003DMT400058108	Potato	cytosol	89.8	89.34
Bra036819.1-P	Field mustard	cytosol, plastid	89.8	89.34
CDY59617	Canola	cytosol, plastid	89.8	89.34
Bra012858.1-P	Field mustard	cytosol, plastid	89.8	89.34
Bra002093.1-P	Field mustard	cytosol	89.8	89.34
CDY59407	Canola	cytosol, plastid	79.59	89.14
Solyc02g062020.2.1	Tomato	plastid	89.29	88.83
PGSC0003DMT400061371	Potato	cytosol	89.29	88.83
VIT_18s0001g14670.t01	Wine grape	cytosol	89.29	88.83
KRH69754	Soybean	cytosol	89.29	88.83
CDY30344	Canola	cytosol	89.29	88.83
CDX90652	Canola	cytosol, plastid	89.29	88.83
CDY20828	Canola	cytosol	88.27	87.82
VIT_03s0038g02380.t01	Wine grape	cytosol	88.27	87.37
CDY24378	Canola	cytosol	86.73	87.18
CDY29201	Canola	cytosol	87.24	85.93
VIT_12s0028g02630.t01	Wine grape	cytosol, nucleus, plastid	83.16	83.16
Solyc03g033420.2.1	Tomato	cytosol	81.63	81.22
VIT_15s0021g01130.t01	Wine grape	cytosol	79.59	78.79
VIT_10s0003g00570.t01	Wine grape	cytosol	65.82	75.44
VIT_17s0000g07890.t01	Wine grape	cytosol	76.53	71.43
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	76.02	70.95

Protein Annotations

EntrezGene:100243817	wikigene:100243817	MapMan:27.4.1	Gene3D:3.40.50.300	EMBL:AM434203	ProteinID:CAN76011
ProteinID:CAN76011.1	ProteinID:CBI17332	ProteinID:CBI17332.3	UniProt:D7SNV3	EMBL:FN594959	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	EntrezGene:LOC100243817	wikigene:LOC100243817
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF179
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGR:TC64491	TIGRFAMs:TIGR00231	UniParc:UPI00015CC16F	ArrayExpress:VIT_04s0023g03860	EnsemblPlantsGene:VIT_04s0023g03860
EnsemblPlants:VIT_04s0023g03860.t01	unigene:Vvi.15080	RefSeq:XP_002262953	RefSeq:XP_002262953.1	RefSeq:XP_002262983	RefSeq:XP_002262983.1
RefSeq:XP_002263019	RefSeq:XP_002263019.1	RefSeq:XP_010648993.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:20350195..20354868

Molecular Weight (calculated)

21571.1 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.062

Length

196 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLREDKQFFI DHPGAVPISA AQGEELKRLI DAPAYIECSA KTQQNIKAVF DQAIRVVLQP PKQKKKKSKS KVCSIL

Best Arabidopsis Sequence Match ( AT2G17800.2 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.