Factsheet for VIT_18s0001g14670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0187g00210.t01
VIT_04s0043g00740.t01
VIT_11s0016g00100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444
AT1G20090.1	VIT_04s0043g00740.t01	AT5G18410.1	15294869
AT1G75840.1	VIT_00s0187g00210.t01	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02380.t01	Wine grape	cytosol	96.45	95.96
KRH51687	Soybean	cytosol, nucleus, plastid	95.43	95.43
KRH61026	Soybean	cytosol, nucleus, plastid	95.43	95.43
KRH61024	Soybean	cytosol	94.42	94.9
AT1G75840.1	Thale cress	cytosol	93.4	93.88
CDX68116	Canola	cytosol	92.39	93.33
CDX85925	Canola	cytosol	92.39	93.33
Bra003739.1-P	Field mustard	cytosol	92.39	93.33
CDY54338	Canola	cytosol	92.89	92.89
Bra016477.1-P	Field mustard	cytosol	92.39	92.86
CDY13528	Canola	cytosol	92.39	92.86
CDY39066	Canola	cytosol	92.39	92.86
CDY62937	Canola	cytosol	92.39	92.86
Bra008227.1-P	Field mustard	cytosol	92.39	92.86
Zm00001d015036_P005	Maize	cytosol	92.39	92.39
TraesCS6D01G068500.2	Wheat	cytosol	92.39	92.39
TraesCS6B01G094700.2	Wheat	cytosol	92.39	92.39
TraesCS6A01G070700.2	Wheat	cytosol	92.39	92.39
Os02t0120800-01	Rice	plasma membrane	92.39	92.39
EES06186	Sorghum	cytosol	92.39	92.39
CDX73206	Canola	cytosol	91.88	92.35
AT1G20090.1	Thale cress	cytosol	91.37	92.31
CDY43414	Canola	cytosol	91.88	91.88
CDX87656	Canola	cytosol	90.86	91.33
Bra015807.1-P	Field mustard	cytosol	90.86	91.33
Bra012210.1-P	Field mustard	cytosol	90.86	90.86
VIT_04s0023g03860.t01	Wine grape	cytosol	88.83	89.29
VIT_12s0028g02630.t01	Wine grape	cytosol, nucleus, plastid	87.31	87.76
CDY57592	Canola	cytosol	90.86	87.75
VIT_15s0021g01130.t01	Wine grape	cytosol	80.71	80.3
VIT_10s0003g00570.t01	Wine grape	cytosol	65.99	76.02
VIT_17s0000g07890.t01	Wine grape	cytosol	80.2	75.24
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	79.7	74.76
Zm00001d053899_P001	Maize	cytosol	87.82	74.57
HORVU6Hr1G012690.3	Barley	plastid	92.89	64.66

Protein Annotations

EntrezGene:100266143	wikigene:100266143	MapMan:27.4.1	Gene3D:3.40.50.300	UniProt:A5CAU5	EMBL:AM488526
ProteinID:CAN71069	ProteinID:CAN71069.1	ProteinID:CBI19900	ProteinID:CBI19900.3	EMBL:FN595227	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	EntrezGene:LOC100266143
wikigene:LOC100266143	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF249	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGR:TC57593	TIGRFAMs:TIGR00231	UniParc:UPI0001522B29	ArrayExpress:VIT_18s0001g14670
EnsemblPlantsGene:VIT_18s0001g14670	EnsemblPlants:VIT_18s0001g14670.t01	unigene:Vvi.12219	RefSeq:XP_002272532	RefSeq:XP_002272532.1	RefSeq:XP_010664844.1
RefSeq:XP_010664845.1	RefSeq:XP_010664846.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:12719099..12724188

Molecular Weight (calculated)

21620.2 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.096

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFV DHPGAVPITT AQGEELKKVI GAPAYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKKA QKTCSIL

Best Arabidopsis Sequence Match ( AT1G75840.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPIYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKNK NRCVFL

Arabidopsis Description

ARAC5Rac-like GTP-binding protein ARAC5 [Source:UniProtKB/Swiss-Prot;Acc:Q38937]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.