Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g01630.t01 | |
| VIT_18s0001g14670.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013290.1.1 | Tomato | cytosol | 25.38 | 90.4 |
| KRH68821 | Soybean | nucleus | 85.88 | 84.81 |
| KRG97079 | Soybean | nucleus | 85.8 | 84.73 |
| Solyc11g013280.1.1 | Tomato | cytosol | 60.27 | 83.06 |
| Bra006457.1-P | Field mustard | cytosol | 82.47 | 81.7 |
| AT5G18410.1 | Thale cress | cytosol | 83.11 | 81.68 |
| CDX70816 | Canola | cytosol | 82.55 | 81.07 |
| CDY51228 | Canola | cytosol | 82.79 | 80.68 |
| Os03t0143800-01 | Rice | cytosol | 74.7 | 73.25 |
| OQU93249 | Sorghum | cytosol | 74.07 | 72.68 |
| TraesCS4D01G306200.4 | Wheat | plastid | 74.31 | 72.58 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 74.15 | 72.42 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 74.07 | 72.35 |
| Zm00001d027633_P011 | Maize | mitochondrion | 59.4 | 71.95 |
| HORVU4Hr1G078840.3 | Barley | plastid | 74.15 | 68.45 |
| KRH74900 | Soybean | plastid | 3.65 | 67.65 |
| GSMUA_Achr4P00570_001 | Banana | endoplasmic reticulum, plasma membrane | 37.27 | 64.12 |
| Os03t0143900-00 | Rice | extracellular | 3.97 | 18.18 |
Protein Annotations
| ArrayExpress:VIT_04s0043g00740 | EMBL:AM442762 | EMBL:FN595763 | EnsemblPlants:VIT_04s0043g00740.t01 | EnsemblPlantsGene:VIT_04s0043g00740 | InterPro:Cytoplasmic_FMR1-int |
| InterPro:DUF1394 | ncoils:Coil | PANTHER:PTHR12195 | PANTHER:PTHR12195:SF0 | PFAM:PF05994 | PFAM:PF07159 |
| PIRSF:PIRSF008153 | PRINTS:PR01698 | ProteinID:CAN80661 | ProteinID:CAN80661.1 | ProteinID:CCB51875 | ProteinID:CCB51875.1 |
| SEG:seg | UniParc:UPI00021090B7 | UniProt:F6HI28 | MapMan:20.2.2.2.1 | : | : |
Description
No Description!
Coordinates
chr4:+:14742986..14865943
Molecular Weight (calculated)
143248.0 Da
IEP (calculated)
5.705
GRAVY (calculated)
-0.046
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVPVEEAIA ALSTFSLEDD QPEVQGPAVW ISTERGATQS PIEYTDVSAY RLSLSEDTKA LNQLNSLIQE GKEMASVLYT YRSCVKALPQ LPDSMKQSQA
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERRINGPTI THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SVHWQDTDSM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FAVESLELDF ALLFPERHIL LRVLPVLVVL ATSSEKDSES LYKRVKINRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELAMY FQKFSTQTRL LTLPSPHELP PREAQEYPFI FSLLLLKSSD SADVEWCKEV KGNMYDMVVE GFQLLSRWTA RIWEQCAWKF
0401: SRPCKVSVPM ESYEASGSFS DYEKVVRYNY SAEERKGLVE LVSYIKSIGS MMQRCDTLVA DALWETIHAE VQDFVQNTLA TMLRTTFRKK KDLSRILSDM
0501: RTLSADWMAN TSRPESDLQP LQHGGEESRG TFFHPRPVAP TSAQVHCLQF LIYEVVSGGN LRKPGGLFGN SGSEIPVNDL KQLETFFYKL SFFLHVLDYT
0601: VTVATLTDLG FLWFREFYLE SSRVIQFPIE CSLPWMLVDH VLDSQNAGLL ESILMPFDIY NDSAQQALVV LKQRFLYDEI EAEVDHCFDI FVSKLCDNIF
0701: TYYKSWAASE LLDPSFLFAL DNGEKYSIQP MRFTALLKMT RVKLLGRTID LRSLIAERMN KVFRENLEFL FDRFESQDLC CIVELEKLLD VLKHAHELLS
0801: KDLLMDAFNL MLSEMQENIS LVSYSSRLAS QIWMEMRNDF LPNFILCNTT QRFVRSSKVP SVPVQRPSVP SAKPNFYCGT QDLNSAHQTF AQLHSGFFGM
0901: AHMFSIVRLL GSRSLPWLIR ALLDHISNKI ATLEPMITGL QEALPKSIGL LPFDGGVTGC MRLVRENLNW ASKPELKCEV LRGIKEIGSV LYWMGLLDIV
1001: LRELDTTHFM QTAPWLGLIP GVDGQILQGQ DCGDSPVVTL FKSATAAIVS NPGCLDPTSF HTLSKQAEAA DLLCKANMNT GSVLEYALAF TSAALDKYCS
1101: KWSAAPKTGF LDITTSKDFY RIFSGLQIGH LEESVQLPPN NHEILGDSVA WGGCTIIYLL GQQLHFELFD FSYQVLNVAE VEVAALIQTH KNPHLAQGWE
1201: CLLEAMKKAR RLNNHVFSML KARCPLEDKV ACAIKQSGAP LHRIKFENTV SAFETLPQKG V
0101: DLYLETYQVL DLEMSRLREI QRWQASAASK LAADMQRFSR PERRINGPTI THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SVHWQDTDSM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FAVESLELDF ALLFPERHIL LRVLPVLVVL ATSSEKDSES LYKRVKINRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELAMY FQKFSTQTRL LTLPSPHELP PREAQEYPFI FSLLLLKSSD SADVEWCKEV KGNMYDMVVE GFQLLSRWTA RIWEQCAWKF
0401: SRPCKVSVPM ESYEASGSFS DYEKVVRYNY SAEERKGLVE LVSYIKSIGS MMQRCDTLVA DALWETIHAE VQDFVQNTLA TMLRTTFRKK KDLSRILSDM
0501: RTLSADWMAN TSRPESDLQP LQHGGEESRG TFFHPRPVAP TSAQVHCLQF LIYEVVSGGN LRKPGGLFGN SGSEIPVNDL KQLETFFYKL SFFLHVLDYT
0601: VTVATLTDLG FLWFREFYLE SSRVIQFPIE CSLPWMLVDH VLDSQNAGLL ESILMPFDIY NDSAQQALVV LKQRFLYDEI EAEVDHCFDI FVSKLCDNIF
0701: TYYKSWAASE LLDPSFLFAL DNGEKYSIQP MRFTALLKMT RVKLLGRTID LRSLIAERMN KVFRENLEFL FDRFESQDLC CIVELEKLLD VLKHAHELLS
0801: KDLLMDAFNL MLSEMQENIS LVSYSSRLAS QIWMEMRNDF LPNFILCNTT QRFVRSSKVP SVPVQRPSVP SAKPNFYCGT QDLNSAHQTF AQLHSGFFGM
0901: AHMFSIVRLL GSRSLPWLIR ALLDHISNKI ATLEPMITGL QEALPKSIGL LPFDGGVTGC MRLVRENLNW ASKPELKCEV LRGIKEIGSV LYWMGLLDIV
1001: LRELDTTHFM QTAPWLGLIP GVDGQILQGQ DCGDSPVVTL FKSATAAIVS NPGCLDPTSF HTLSKQAEAA DLLCKANMNT GSVLEYALAF TSAALDKYCS
1101: KWSAAPKTGF LDITTSKDFY RIFSGLQIGH LEESVQLPPN NHEILGDSVA WGGCTIIYLL GQQLHFELFD FSYQVLNVAE VEVAALIQTH KNPHLAQGWE
1201: CLLEAMKKAR RLNNHVFSML KARCPLEDKV ACAIKQSGAP LHRIKFENTV SAFETLPQKG V
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LREVDTKRFM QTAPWLGLIP GAEGQIVNAQ DGESPLVNLL KSATSAVVSS PGCLNPAAFY TMSKQAEAAD LLYKANMNGG
1101: SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR IYGGLQIGYL EEITAPQSAQ HEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201: ETVSASHTHR NPQIHQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL PRVRFENTVS AFETLPQKGT VG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.