Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d015036_P005 | |
| Zm00001d046391_P001 | |
| Zm00001d053899_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013290.1.1 | Tomato | cytosol | 28.82 | 84.75 |
| CDX70818 | Canola | cytosol | 8.07 | 80.0 |
| OQU93249 | Sorghum | cytosol | 96.45 | 78.13 |
| TraesCS4B01G308000.2 | Wheat | cytosol | 92.22 | 74.36 |
| Os03t0143800-01 | Rice | cytosol | 91.83 | 74.34 |
| TraesCS4D01G306200.4 | Wheat | plastid | 92.12 | 74.28 |
| TraesCS4A01G408900.2 | Wheat | cytosol | 91.93 | 74.13 |
| HORVU4Hr1G078840.3 | Barley | plastid | 92.03 | 70.13 |
| VIT_04s0043g00740.t01 | Wine grape | cytosol | 71.95 | 59.4 |
| AT5G18410.1 | Thale cress | cytosol | 73.01 | 59.24 |
| Bra006457.1-P | Field mustard | cytosol | 72.33 | 59.15 |
| CDX70816 | Canola | cytosol | 72.53 | 58.8 |
| CDY51228 | Canola | cytosol | 72.91 | 58.66 |
| KRH33588 | Soybean | cytosol | 6.44 | 57.27 |
| Solyc11g013280.1.1 | Tomato | cytosol | 43.23 | 49.18 |
| GSMUA_Achr4P00580_001 | Banana | cytosol, extracellular, mitochondrion, nucleus | 0.48 | 1.82 |
Protein Annotations
| EnsemblPlants:Zm00001d027633_P011 | EnsemblPlants:Zm00001d027633_T011 | EnsemblPlantsGene:Zm00001d027633 | InterPro:Cytoplasmic_FMR1-int | InterPro:DUF1394 | PANTHER:PTHR12195 |
| PANTHER:PTHR12195:SF0 | PFAM:PF05994 | PFAM:PF07159 | PIRSF:PIRSF008153 | PRINTS:PR01698 | ProteinID:ONL93583.1 |
| SEG:seg | UniParc:UPI00084302D1 | UniProt:A0A1D6JNG8 | MapMan:20.2.2.2.1 | : | : |
Description
Protein PIR
Coordinates
chr1:+:9547625..9612900
Molecular Weight (calculated)
119340.0 Da
IEP (calculated)
5.354
GRAVY (calculated)
-0.092
Length
1041 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAIPVEEAIA ALSTFSLEDE QPDVQGLAVL LSSERYATNS PIEYSDVAAY RLSLGEDTKA INQLNTLIKE GKEMTSLLYT YRSCVKALPQ LPDSMKHNQA
0101: DLYLETYQVL DMEMSHLREI QRWQASAASK LAADMQRFSR PERLVNGPTI THFWSMLKLL DVLLQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKINRL LNVFKNDPVI
0301: PAFPDLHLSP AAILKELSSY FQNFSSQTRL LALQAPHEIQ GRELQEYPRH YLILNHMGTI RADHDDFSIR FASAMDQMIR LKSSDGVYND WSRDIKGNMY
0401: DIVVEGFQLL SRWTGRIWEQ CAWKFSRPIS DSQQNSMTCF DYEKVVRYNY TAEERRALLE LIGYIKSIGL MMQHCDTLVS EALWETIHME VQDFVQDKLD
0501: TMLRTTFRKK KDLSRILSDM RTLSADWMAS TSKADPEQHS LHQETEEMRQ NTFYPRPVAP TAAQIHCLQF LICELVSGGN LRKVGGLFGN SGSGIPVEDL
0601: KQLETFFYKL SFFLHILDYT ATIGTLTDLG FLWFREFYLE SSRVIQFPIE CSLPWMLVGH VIESEDAGLL ESILIPFDLY NDSAQHALTS LKQRFLYDEI
0701: EAEADLCFDL LAQKLNEIIF TYYKSCAAST LLDSSFTYAC DDGDKYFVKP LRFDAIFKLR RVMVLGRTID LRSIITQRMN KIFRENIDFL LERFENGDLC
0801: GVVELQQLLD ILELTHQSIS RFLELDSYSL MLSEMQENLS LVSYSSRISS QIWSEMQTDF LPNFILCNTT QRFVRSAKGT HHSSHRSSAS TGKPYFYCGS
0901: HDLTMAYQGL AGLYRDFFGV PHMFAVVKLL GSRSLPAIIR ALLDHISSKI TGLLPKINAL QEALPKSIGL LSFDGGIAEY GLAAISSFGC QKIVHEILTW
1001: EAKSEVKTEV LHDLKEIGSA LYWMSILDIV LRGLVDLKEL S
0101: DLYLETYQVL DMEMSHLREI QRWQASAASK LAADMQRFSR PERLVNGPTI THFWSMLKLL DVLLQLDHLK NAKASIPNDF SWYKRTFTQV STQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHAEMFRTNT VEDILQVLIV FCVESLELDF ALLFPERHTL LRVLPVLVVL ATSSEKESES LYKRVKINRL LNVFKNDPVI
0301: PAFPDLHLSP AAILKELSSY FQNFSSQTRL LALQAPHEIQ GRELQEYPRH YLILNHMGTI RADHDDFSIR FASAMDQMIR LKSSDGVYND WSRDIKGNMY
0401: DIVVEGFQLL SRWTGRIWEQ CAWKFSRPIS DSQQNSMTCF DYEKVVRYNY TAEERRALLE LIGYIKSIGL MMQHCDTLVS EALWETIHME VQDFVQDKLD
0501: TMLRTTFRKK KDLSRILSDM RTLSADWMAS TSKADPEQHS LHQETEEMRQ NTFYPRPVAP TAAQIHCLQF LICELVSGGN LRKVGGLFGN SGSGIPVEDL
0601: KQLETFFYKL SFFLHILDYT ATIGTLTDLG FLWFREFYLE SSRVIQFPIE CSLPWMLVGH VIESEDAGLL ESILIPFDLY NDSAQHALTS LKQRFLYDEI
0701: EAEADLCFDL LAQKLNEIIF TYYKSCAAST LLDSSFTYAC DDGDKYFVKP LRFDAIFKLR RVMVLGRTID LRSIITQRMN KIFRENIDFL LERFENGDLC
0801: GVVELQQLLD ILELTHQSIS RFLELDSYSL MLSEMQENLS LVSYSSRISS QIWSEMQTDF LPNFILCNTT QRFVRSAKGT HHSSHRSSAS TGKPYFYCGS
0901: HDLTMAYQGL AGLYRDFFGV PHMFAVVKLL GSRSLPAIIR ALLDHISSKI TGLLPKINAL QEALPKSIGL LSFDGGIAEY GLAAISSFGC QKIVHEILTW
1001: EAKSEVKTEV LHDLKEIGSA LYWMSILDIV LRGLVDLKEL S
0001: MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVDTKRF MQTAPWLGLI PGAEGQIVNA QDGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG
1101: GSVLEYTLAF TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITAPQSA QHEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE
1201: VETVSASHTH RNPQIHQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFETLPQKG TVG
0101: DLYLETYQVL DLEMSRLREI QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF SWYKRTFTQV SAQWQDTDTM
0201: REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRL INIFKNDPVI
0301: PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY
0401: DMVVEGFQLL SRWTARIWEQ CAWKFSRPCR DAGETPEASG SYSDYEKVVR FNYTAEERKA LVELVGYIKS VGSMLQRCDT LVADALWETI HAEVQDFVQN
0501: TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM PSSQHGNDES RGNFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
0601: DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI DYILEAQNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD
0701: EIEAEVDHGF DIFVSRLSES IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR MNRIFRENLE FLFDRFESQD
0801: LCAVVELEKL IDILKHSHEL LSQDLSIDPF SLMLNEMQEN ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
0901: QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL QEALPKSIGL LSFDGGVTGC MKLIREQLNW GTKSELKSEV
1001: LRGIKEIGSV IYTMGLLDIV LVSPVDTKRF MQTAPWLGLI PGAEGQIVNA QDGESPLVNL LKSATSAVVS SPGCLNPAAF YTMSKQAEAA DLLYKANMNG
1101: GSVLEYTLAF TSASLDKYCS KWSAPPKTGF VDITTSKDFY RIYGGLQIGY LEEITAPQSA QHEVLGDSIA WGGCTIIYLL GQQLHFELFD FSYQVLNVSE
1201: VETVSASHTH RNPQIHQGWE GLLEGMKKAR RLNNHVFSML KARCPLEDKT ACAIKQSGAP LPRVRFENTV SAFETLPQKG TVG
Arabidopsis Description
PIRtranscription activators [Source:TAIR;Acc:AT5G18410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.